Gene annotation
Transcriptome id Sobic.001G030200.2,Sobic.001G030200.1
Synonym Sb01g002830, PTAC13
Functional annotation transcription termination factor nusG family protein, expressed
UniProt C5WU52
Pfam PF00467 PF02357
Panther DB PTHR30265 PTHR30265:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G09210 : plastid transcriptionally active 13
RAP-DB (Rice) LOC_Os03g61030.1 : transcription termination factor nusG family protein, expressed
MaizeGDB (Corn) Zm00025a008858
Brachypodium KQK12387
Barley HORVU5Hr1G114890.6 , HORVU5Hr1G114890.7 , HORVU5Hr1G114890.4 , HORVU5Hr1G114890.5 , HORVU5Hr1G114890.2 , HORVU5Hr1G114890.3 , HORVU5Hr1G114890.1 , HORVU5Hr1G114890.8
Wheat TraesCS5A02G487100 , TraesCS5D02G501300 , TraesCS5B02G500900
Populus -


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cDNA sequences
Sobic.001G030200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
2 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
5 Sobic.004G353900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
6 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
7 Sobic.004G016700 expressed protein -
8 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
9 Sobic.004G072000 ribosome, putative, expressed -
10 Sobic.002G285450 - -
11 Sobic.008G139900 expressed protein -
12 Sobic.002G406400 PPR repeat domain containing protein, putative, expressed -
13 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
14 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
15 Sobic.010G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
16 Sobic.006G118000 expressed protein -
17 Sobic.001G460700 expressed protein -
18 Sobic.004G328700 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
19 Sobic.004G297800 transferase family protein, putative, expressed -
20 Sobic.001G263500 glycosyl hydrolases family 17, putative, expressed -


Gene co-expression network
sample Sobic001G030200 Sobic001G030200 Sobic010G208000 Sobic010G208000 Sobic001G030200--Sobic010G208000 Sobic002G019900 Sobic002G019900 Sobic001G030200--Sobic002G019900 Sobic004G066300 Sobic004G066300 Sobic001G030200--Sobic004G066300 Sobic001G516800 Sobic001G516800 Sobic001G030200--Sobic001G516800 Sobic004G353900 Sobic004G353900 Sobic001G030200--Sobic004G353900 Sobic008G131200 Sobic008G131200 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic004G034500 Sobic004G034500 Sobic001G030200--Sobic004G034500 Sobic004G072000 Sobic004G072000 Sobic001G030200--Sobic004G072000 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic009G179800 Sobic009G179800 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic010G208000--Sobic004G066300 Sobic002G019900--Sobic001G030200 Sobic002G285450 Sobic002G285450 Sobic002G019900--Sobic002G285450 Sobic002G019900--Sobic010G208000 Sobic002G019900--Sobic001G516800 Sobic007G139000 Sobic007G139000 Sobic002G019900--Sobic007G139000 Sobic003G111600 Sobic003G111600 Sobic002G019900--Sobic003G111600 Sobic002G019900--Sobic004G016700 Sobic001G460700 Sobic001G460700 Sobic002G019900--Sobic001G460700 Sobic002G406400 Sobic002G406400 Sobic002G019900--Sobic002G406400 Sobic004G066300--Sobic001G030200 Sobic004G066300--Sobic004G353900 Sobic004G066300--Sobic008G131200 Sobic001G115800 Sobic001G115800 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic004G066300--Sobic010G208000 Sobic004G297800 Sobic004G297800 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G516800--Sobic001G030200 Sobic001G147400 Sobic001G147400 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic001G516800--Sobic002G019900 Sobic001G543500 Sobic001G543500 Sobic001G516800--Sobic001G543500 Sobic001G516800--Sobic009G179800 Sobic004G353900--Sobic004G066300 Sobic004G353900--Sobic001G030200 Sobic004G353900--Sobic010G208000 Sobic004G353900--Sobic004G034500 Sobic009G010900 Sobic009G010900 Sobic004G353900--Sobic009G010900 Sobic004G353900--Sobic008G131200 Sobic009G083000 Sobic009G083000 Sobic004G353900--Sobic009G083000 Sobic004G353900--Sobic001G516800 Sobic001G094200 Sobic001G094200 Sobic004G353900--Sobic001G094200 Sobic008G131200--Sobic001G115800 Sobic008G131200--Sobic004G297800 Sobic008G139900 Sobic008G139900 Sobic008G131200--Sobic008G139900 Sobic008G131200--Sobic004G072000 Sobic010G258700 Sobic010G258700 Sobic008G131200--Sobic010G258700 Sobic008G131200--Sobic006G247500 Sobic008G131200--Sobic004G066300 Sobic006G079100 Sobic006G079100 Sobic008G131200--Sobic006G079100 Sobic003G013100 Sobic003G013100 Sobic008G131200--Sobic003G013100 Sobic003G397000 Sobic003G397000 Sobic004G016700--Sobic003G397000 Sobic002G320200 Sobic002G320200 Sobic004G016700--Sobic002G320200 Sobic004G016700--Sobic001G460700 Sobic004G016700--Sobic001G030200 Sobic006G280300 Sobic006G280300 Sobic004G016700--Sobic006G280300 Sobic003G396900 Sobic003G396900 Sobic004G016700--Sobic003G396900 Sobic010G179000 Sobic010G179000 Sobic004G016700--Sobic010G179000 Sobic004G016700--Sobic004G066300 Sobic004G016700--Sobic004G297800 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic004G034500--Sobic001G543500 Sobic004G072000--Sobic010G208000 Sobic004G072000--Sobic004G034500 Sobic010G244600 Sobic010G244600 Sobic004G072000--Sobic010G244600 Sobic004G072000--Sobic008G139900 Sobic007G204400 Sobic007G204400 Sobic004G072000--Sobic007G204400 Sobic004G072000--Sobic001G115800 Sobic004G072000--Sobic008G131200 Sobic006G204000 Sobic006G204000 Sobic004G072000--Sobic006G204000 Sobic004G072000--Sobic010G258700
Octagon: transcription factors


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