Gene annotation
Transcriptome id Sobic.004G034500.1
Synonym Sb04g002980
Functional annotation ribosomal protein L3, putative, expressed
UniProt C5XTY9
Pfam PF00297
Panther DB PTHR11229 PTHR11229:SF5
NCBI CDD KOG3141; Mitochondrial/chloroplast ribosomal protein L3
KEGG Orthology K02906; RP-L3, MRPL3, large subunit ribosomal protein L3
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G43030 : Ribosomal protein L3 family protein
RAP-DB (Rice) LOC_Os02g04460.1 : ribosomal protein L3, putative, expressed
MaizeGDB (Corn) Zm00025a018914
Brachypodium KQJ93224
Barley HORVU6Hr1G018830.4 , HORVU6Hr1G018830.1 , HORVU6Hr1G018830.2 , HORVU6Hr1G018830.3
Wheat TraesCS6A02G105400 , TraesCS6D02G094200 , TraesCS6B02G134800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G072000 ribosome, putative, expressed -
2 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
3 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
4 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
5 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
6 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G033900 expressed protein -
8 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
9 Sobic.001G543500 "generic sugar transporter, up-regulated under drought stress "(PubMedID : 24655390)@Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@transporter family protein, putative, expressed -
10 Sobic.004G353900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
11 Sobic.008G139900 expressed protein -
12 Sobic.001G115800 expressed protein -
13 Sobic.006G118000 expressed protein -
14 Sobic.005G128100 acyl carrier protein, putative, expressed -
15 Sobic.004G231800 ribosomal protein L29, putative, expressed K02904: RP-L29, large subunit ribosomal protein L29
16 Sobic.010G258700 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed K15227: arogenate dehydrogenase (NADP+), plant
17 Sobic.010G244600 nifU, putative, expressed -
18 Sobic.002G088200 expressed protein -
19 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
20 Sobic.007G013500 expressed protein -


Gene co-expression network
sample Sobic004G034500 Sobic004G034500 Sobic004G072000 Sobic004G072000 Sobic004G034500--Sobic004G072000 Sobic010G208000 Sobic010G208000 Sobic004G034500--Sobic010G208000 Sobic001G516800 Sobic001G516800 Sobic004G034500--Sobic001G516800 Sobic001G030200 Sobic001G030200 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G066300 Sobic004G066300 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic008G131200 Sobic008G131200 Sobic004G034500--Sobic008G131200 Sobic001G543500 Sobic001G543500 Sobic004G034500--Sobic001G543500 Sobic004G072000--Sobic010G208000 Sobic004G072000--Sobic004G034500 Sobic010G244600 Sobic010G244600 Sobic004G072000--Sobic010G244600 Sobic008G139900 Sobic008G139900 Sobic004G072000--Sobic008G139900 Sobic007G204400 Sobic007G204400 Sobic004G072000--Sobic007G204400 Sobic001G115800 Sobic001G115800 Sobic004G072000--Sobic001G115800 Sobic004G072000--Sobic008G131200 Sobic006G204000 Sobic006G204000 Sobic004G072000--Sobic006G204000 Sobic010G258700 Sobic010G258700 Sobic004G072000--Sobic010G258700 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic002G019900 Sobic002G019900 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic009G179800 Sobic009G179800 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic010G208000--Sobic004G066300 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G516800--Sobic001G030200 Sobic001G147400 Sobic001G147400 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic001G516800--Sobic002G019900 Sobic001G516800--Sobic001G543500 Sobic001G516800--Sobic009G179800 Sobic001G030200--Sobic010G208000 Sobic001G030200--Sobic002G019900 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic004G353900 Sobic004G353900 Sobic001G030200--Sobic004G353900 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic001G030200--Sobic004G072000 Sobic003G393800 Sobic003G393800 Sobic003G246600--Sobic003G393800 Sobic003G246600--Sobic009G179800 Sobic003G246400 Sobic003G246400 Sobic003G246600--Sobic003G246400 Sobic010G233800 Sobic010G233800 Sobic003G246600--Sobic010G233800 Sobic001G411300 Sobic001G411300 Sobic003G246600--Sobic001G411300 Sobic001G076500 Sobic001G076500 Sobic003G246600--Sobic001G076500 Sobic001G427000 Sobic001G427000 Sobic003G246600--Sobic001G427000 Sobic006G268200 Sobic006G268200 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200 Sobic004G066300--Sobic001G030200 Sobic004G066300--Sobic004G353900 Sobic004G066300--Sobic008G131200 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic004G066300--Sobic010G208000 Sobic004G297800 Sobic004G297800 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000 Sobic004G033900--Sobic002G088200 Sobic004G033900--Sobic004G034500 Sobic004G033900--Sobic001G543500 Sobic005G052000 Sobic005G052000 Sobic004G033900--Sobic005G052000 Sobic004G033900--Sobic001G516800 Sobic010G108500 Sobic010G108500 Sobic004G033900--Sobic010G108500 Sobic001G310800 Sobic001G310800 Sobic004G033900--Sobic001G310800 Sobic010G082800 Sobic010G082800 Sobic004G033900--Sobic010G082800 Sobic006G118000 Sobic006G118000 Sobic004G033900--Sobic006G118000 Sobic008G131200--Sobic001G115800 Sobic008G131200--Sobic004G297800 Sobic008G131200--Sobic008G139900 Sobic008G131200--Sobic004G072000 Sobic008G131200--Sobic010G258700 Sobic008G131200--Sobic006G247500 Sobic008G131200--Sobic004G066300 Sobic006G079100 Sobic006G079100 Sobic008G131200--Sobic006G079100 Sobic003G013100 Sobic003G013100 Sobic008G131200--Sobic003G013100 Sobic001G543500--Sobic002G088200 Sobic001G543500--Sobic004G072000 Sobic001G543500--Sobic008G139900 Sobic001G543500--Sobic001G516800 Sobic001G543500--Sobic010G208000 Sobic001G543500--Sobic004G034500 Sobic001G543500--Sobic004G033900 Sobic005G005500 Sobic005G005500 Sobic001G543500--Sobic005G005500 Sobic002G314200 Sobic002G314200 Sobic001G543500--Sobic002G314200
Octagon: transcription factors


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