Gene annotation
Transcriptome id Sobic.001G147400.1
Synonym Sb01g012850
Functional annotation Ferredoxin (PubMedID : 26186930)
2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5WQF7
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF127
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT4G14890 : 2Fe-2S ferredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os03g45710.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007548
Brachypodium KQK13893
Barley HORVU4Hr1G002520.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G147400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
2 Sobic.004G132400 lectin-like receptor kinase, putative, expressed -
3 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
4 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
5 Sobic.008G147101 - -
6 Sobic.003G132300 MYB family transcription factor, putative, expressed -
7 Sobic.002G285450 - -
8 Sobic.002G264800 unknown(PubMedID : 29017446)@expressed protein -
9 Sobic.002G110800 mitochondrial carrier protein, putative, expressed K15111: solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26
10 Sobic.002G088200 expressed protein -
11 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.004G204500 expressed protein -
13 Sobic.009G179800 - -
14 Sobic.003G309700 decarboxylase, putative, expressed K01592: tyrosine decarboxylase
15 Sobic.004G023400 expressed protein -
16 Sobic.002G406400 PPR repeat domain containing protein, putative, expressed -
17 Sobic.002G119500 Photosystem I reaction center subunit IV(PubMedID : 26186930)@photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed K02693: photosystem I subunit IV
18 Sobic.010G136900 white-brown complex homolog protein 11, putative, expressed -
19 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
20 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic001G147400 Sobic001G147400 Sobic001G516800 Sobic001G516800 Sobic001G147400--Sobic001G516800 Sobic004G132400 Sobic004G132400 Sobic001G147400--Sobic004G132400 Sobic002G283800 Sobic002G283800 Sobic001G147400--Sobic002G283800 Sobic010G208000 Sobic010G208000 Sobic001G147400--Sobic010G208000 Sobic008G147101 Sobic008G147101 Sobic001G147400--Sobic008G147101 Sobic003G132300 Sobic003G132300 Sobic001G147400--Sobic003G132300 Sobic002G285450 Sobic002G285450 Sobic001G147400--Sobic002G285450 Sobic002G264800 Sobic002G264800 Sobic001G147400--Sobic002G264800 Sobic002G110800 Sobic002G110800 Sobic001G147400--Sobic002G110800 Sobic001G516800--Sobic010G208000 Sobic001G516800--Sobic002G283800 Sobic001G030200 Sobic001G030200 Sobic001G516800--Sobic001G030200 Sobic001G516800--Sobic001G147400 Sobic004G034500 Sobic004G034500 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic002G019900 Sobic002G019900 Sobic001G516800--Sobic002G019900 Sobic001G543500 Sobic001G543500 Sobic001G516800--Sobic001G543500 Sobic009G179800 Sobic009G179800 Sobic001G516800--Sobic009G179800 Sobic004G132400--Sobic001G147400 Sobic004G132400--Sobic003G132300 Sobic003G211500 Sobic003G211500 Sobic004G132400--Sobic003G211500 Sobic004G132400--Sobic002G285450 Sobic004G132400--Sobic002G283800 Sobic004G132400--Sobic001G516800 Sobic004G204500 Sobic004G204500 Sobic004G132400--Sobic004G204500 Sobic004G132400--Sobic008G147101 Sobic006G229300 Sobic006G229300 Sobic004G132400--Sobic006G229300 Sobic010G136900 Sobic010G136900 Sobic002G283800--Sobic010G136900 Sobic002G283800--Sobic001G516800 Sobic002G101800 Sobic002G101800 Sobic002G283800--Sobic002G101800 Sobic002G283800--Sobic002G285450 Sobic007G139000 Sobic007G139000 Sobic002G283800--Sobic007G139000 Sobic002G283800--Sobic004G132400 Sobic003G191800 Sobic003G191800 Sobic002G283800--Sobic003G191800 Sobic002G283800--Sobic001G147400 Sobic003G111600 Sobic003G111600 Sobic002G283800--Sobic003G111600 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic004G072000 Sobic004G072000 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic008G131200 Sobic008G131200 Sobic010G208000--Sobic008G131200 Sobic010G208000--Sobic009G179800 Sobic010G208000--Sobic004G204500 Sobic004G066300 Sobic004G066300 Sobic010G208000--Sobic004G066300 Sobic008G147101--Sobic001G147400 Sobic008G147101--Sobic004G132400 Sobic010G108500 Sobic010G108500 Sobic008G147101--Sobic010G108500 Sobic008G147101--Sobic002G283800 Sobic007G124000 Sobic007G124000 Sobic008G147101--Sobic007G124000 Sobic002G320200 Sobic002G320200 Sobic008G147101--Sobic002G320200 Sobic008G147101--Sobic001G516800 Sobic006G118000 Sobic006G118000 Sobic008G147101--Sobic006G118000 Sobic003G397000 Sobic003G397000 Sobic008G147101--Sobic003G397000 Sobic003G132300--Sobic006G229300 Sobic003G305300 Sobic003G305300 Sobic003G132300--Sobic003G305300 Sobic003G132300--Sobic004G132400 Sobic003G132300--Sobic003G211500 Sobic004G202600 Sobic004G202600 Sobic003G132300--Sobic004G202600 Sobic009G212000 Sobic009G212000 Sobic003G132300--Sobic009G212000 Sobic003G132300--Sobic009G179800 Sobic002G215000 Sobic002G215000 Sobic003G132300--Sobic002G215000 Sobic004G023400 Sobic004G023400 Sobic003G132300--Sobic004G023400 Sobic002G285450--Sobic002G019900 Sobic002G406400 Sobic002G406400 Sobic002G285450--Sobic002G406400 Sobic009G157000 Sobic009G157000 Sobic002G285450--Sobic009G157000 Sobic002G285450--Sobic002G283800 Sobic002G285450--Sobic004G132400 Sobic002G285450--Sobic001G516800 Sobic009G010900 Sobic009G010900 Sobic002G285450--Sobic009G010900 Sobic002G285450--Sobic001G030200 Sobic002G285450--Sobic007G139000 Sobic007G212400 Sobic007G212400 Sobic002G264800--Sobic007G212400 Sobic001G364100 Sobic001G364100 Sobic002G264800--Sobic001G364100 Sobic001G382100 Sobic001G382100 Sobic002G264800--Sobic001G382100 Sobic001G448400 Sobic001G448400 Sobic002G264800--Sobic001G448400 Sobic009G091850 Sobic009G091850 Sobic002G264800--Sobic009G091850 Sobic002G339200 Sobic002G339200 Sobic002G264800--Sobic002G339200 Sobic003G099400 Sobic003G099400 Sobic002G264800--Sobic003G099400 Sobic002G329600 Sobic002G329600 Sobic002G264800--Sobic002G329600 Sobic006G234100 Sobic006G234100 Sobic002G264800--Sobic006G234100 Sobic002G110800--Sobic001G147400 Sobic008G032300 Sobic008G032300 Sobic002G110800--Sobic008G032300 Sobic004G328700 Sobic004G328700 Sobic002G110800--Sobic004G328700 Sobic002G110800--Sobic001G516800 Sobic002G110800--Sobic010G208000 Sobic004G016700 Sobic004G016700 Sobic002G110800--Sobic004G016700 Sobic002G110800--Sobic004G132400 Sobic003G309700 Sobic003G309700 Sobic002G110800--Sobic003G309700 Sobic002G110800--Sobic002G101800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.