Gene annotation
Transcriptome id Sobic.001G423400.1
Synonym SIG1, SIG2, ABC1, ATSIG1, SIGA, SIGB, ATSIG2, Sb01g039810
Functional annotation RNA polymerase sigma factor, putative, expressed
UniProt C5WQ19
Pfam PF04542 PF04545 PF04539
Panther DB PTHR30603 PTHR30603:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G08540 : RNApolymerase sigma subunit 2
RAP-DB (Rice) LOC_Os03g16430.1 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a001801
Brachypodium -
Barley -
Wheat TraesCS4A02G095200 , TraesCS4D02G210000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G423400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
2 Sobic.007G015500 no apical meristem protein, putative, expressed -
3 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
4 Sobic.003G203000 high light inducible protein, putative, expressed -
5 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
7 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
8 Sobic.006G101500 expressed protein -
9 Sobic.001G005200 expressed protein -
10 Sobic.007G103400 expressed protein -
11 Sobic.003G328100 expressed protein -
12 Sobic.001G183000 peptidase M50 family protein, putative, expressed -
13 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
14 Sobic.002G258600 expressed protein -
15 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
16 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
17 Sobic.008G006100 MATE efflux protein, putative, expressed -
18 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
19 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G423400 Sobic001G423400 Sobic007G162600 Sobic007G162600 Sobic001G423400--Sobic007G162600 Sobic007G015500 Sobic007G015500 Sobic001G423400--Sobic007G015500 Sobic009G237000 Sobic009G237000 Sobic001G423400--Sobic009G237000 Sobic003G203000 Sobic003G203000 Sobic001G423400--Sobic003G203000 Sobic007G107700 Sobic007G107700 Sobic001G423400--Sobic007G107700 Sobic001G286600 Sobic001G286600 Sobic001G423400--Sobic001G286600 Sobic004G281900 Sobic004G281900 Sobic001G423400--Sobic004G281900 Sobic006G101500 Sobic006G101500 Sobic001G423400--Sobic006G101500 Sobic001G005200 Sobic001G005200 Sobic001G423400--Sobic001G005200 Sobic001G500600 Sobic001G500600 Sobic007G162600--Sobic001G500600 Sobic003G070900 Sobic003G070900 Sobic007G162600--Sobic003G070900 Sobic002G258600 Sobic002G258600 Sobic007G162600--Sobic002G258600 Sobic003G094350 Sobic003G094350 Sobic007G162600--Sobic003G094350 Sobic008G006100 Sobic008G006100 Sobic007G162600--Sobic008G006100 Sobic007G162600--Sobic009G237000 Sobic009G170200 Sobic009G170200 Sobic007G162600--Sobic009G170200 Sobic001G516901 Sobic001G516901 Sobic007G162600--Sobic001G516901 Sobic003G287900 Sobic003G287900 Sobic007G162600--Sobic003G287900 Sobic007G015500--Sobic001G286600 Sobic007G015500--Sobic001G423400 Sobic002G136100 Sobic002G136100 Sobic007G015500--Sobic002G136100 Sobic009G219100 Sobic009G219100 Sobic007G015500--Sobic009G219100 Sobic004G154400 Sobic004G154400 Sobic007G015500--Sobic004G154400 Sobic009G207900 Sobic009G207900 Sobic007G015500--Sobic009G207900 Sobic007G015500--Sobic002G258600 Sobic006G158700 Sobic006G158700 Sobic007G015500--Sobic006G158700 Sobic007G015500--Sobic009G237000 Sobic007G103400 Sobic007G103400 Sobic009G237000--Sobic007G103400 Sobic004G353100 Sobic004G353100 Sobic009G237000--Sobic004G353100 Sobic006G102000 Sobic006G102000 Sobic009G237000--Sobic006G102000 Sobic002G298800 Sobic002G298800 Sobic009G237000--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic009G237000--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic009G237000--Sobic001G504400 Sobic003G233700 Sobic003G233700 Sobic009G237000--Sobic003G233700 Sobic007G108900 Sobic007G108900 Sobic009G237000--Sobic007G108900 Sobic008G074000 Sobic008G074000 Sobic009G237000--Sobic008G074000 Sobic003G203000--Sobic007G107700 Sobic009G133700 Sobic009G133700 Sobic003G203000--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G203000--Sobic007G135800 Sobic004G202200 Sobic004G202200 Sobic003G203000--Sobic004G202200 Sobic003G409700 Sobic003G409700 Sobic003G203000--Sobic003G409700 Sobic002G133900 Sobic002G133900 Sobic003G203000--Sobic002G133900 Sobic007G157300 Sobic007G157300 Sobic003G203000--Sobic007G157300 Sobic003G203000--Sobic006G158700 Sobic003G203000--Sobic009G237000 Sobic003G328100 Sobic003G328100 Sobic007G107700--Sobic003G328100 Sobic007G107700--Sobic003G070900 Sobic007G107700--Sobic003G203000 Sobic007G107700--Sobic009G170200 Sobic005G028800 Sobic005G028800 Sobic007G107700--Sobic005G028800 Sobic001G118400 Sobic001G118400 Sobic007G107700--Sobic001G118400 Sobic007G107700--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic007G107700--Sobic010G231500 Sobic001G368600 Sobic001G368600 Sobic007G107700--Sobic001G368600 Sobic001G286600--Sobic004G154400 Sobic009G062400 Sobic009G062400 Sobic001G286600--Sobic009G062400 Sobic010G269400 Sobic010G269400 Sobic001G286600--Sobic010G269400 Sobic010G058200 Sobic010G058200 Sobic001G286600--Sobic010G058200 Sobic001G286600--Sobic001G118400 Sobic001G286600--Sobic003G328100 Sobic006G155500 Sobic006G155500 Sobic001G286600--Sobic006G155500 Sobic006G110900 Sobic006G110900 Sobic001G286600--Sobic006G110900 Sobic001G286600--Sobic003G070900 Sobic007G087100 Sobic007G087100 Sobic004G281900--Sobic007G087100 Sobic004G281900--Sobic003G328100 Sobic004G281900--Sobic003G070900 Sobic004G281900--Sobic006G102000 Sobic006G197300 Sobic006G197300 Sobic004G281900--Sobic006G197300 Sobic004G281900--Sobic001G005200 Sobic006G232600 Sobic006G232600 Sobic004G281900--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic004G281900--Sobic001G436400 Sobic002G072400 Sobic002G072400 Sobic004G281900--Sobic002G072400 Sobic003G387100 Sobic003G387100 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic004G211600 Sobic004G211600 Sobic006G101500--Sobic004G211600 Sobic001G134700 Sobic001G134700 Sobic006G101500--Sobic001G134700 Sobic003G431700 Sobic003G431700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic006G101500--Sobic008G006100 Sobic003G378600 Sobic003G378600 Sobic001G005200--Sobic003G378600 Sobic001G128600 Sobic001G128600 Sobic001G005200--Sobic001G128600 Sobic008G102000 Sobic008G102000 Sobic001G005200--Sobic008G102000 Sobic009G140600 Sobic009G140600 Sobic001G005200--Sobic009G140600 Sobic009G175500 Sobic009G175500 Sobic001G005200--Sobic009G175500 Sobic010G245200 Sobic010G245200 Sobic001G005200--Sobic010G245200 Sobic002G233700 Sobic002G233700 Sobic001G005200--Sobic002G233700 Sobic001G005200--Sobic003G387100 Sobic001G122300 Sobic001G122300 Sobic001G005200--Sobic001G122300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.