Gene annotation
Transcriptome id Sobic.004G040100.1
Synonym Sb04g003470, SbBBX6, B-box (BBX) protein, CIA2
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
CCT motif family protein, expressed
UniProt C5XUM9
Pfam PF06203
Panther DB PTHR31874 PTHR31874:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G57180 : chloroplast import apparatus 2
RAP-DB (Rice) LOC_Os02g05470.1 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a018989 , Zm00025a034890
Brachypodium KQJ93307 , KQJ93306 , PNT65871
Barley HORVU6Hr1G021460.7 , HORVU6Hr1G021460.6 , HORVU6Hr1G021460.5 , HORVU6Hr1G021460.4 , HORVU6Hr1G021460.3 , HORVU6Hr1G021460.2 , HORVU6Hr1G021460.1
Wheat TraesCS6A02G118000 , TraesCS6D02G108000 , TraesCS6B02G146200 , TraesCS6B02G146200
Populus -


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cDNA sequences
Sobic.004G040100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
2 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
3 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
4 Sobic.009G174700 serine/threonine-protein kinase stt7, chloroplast precursor, putative, expressed -
5 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
6 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
7 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.003G203000 high light inducible protein, putative, expressed -
9 Sobic.004G202200 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
10 Sobic.010G201600 tic21, putative, expressed -
11 Sobic.006G235350 - -
12 Sobic.007G107700 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
13 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
14 Sobic.010G173400 down-regulated TF in developmental senescence(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
15 Sobic.009G133700 expressed protein -
16 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
17 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
18 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
19 Sobic.003G409700 rieske domain containing protein, expressed -
20 Sobic.004G343000 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G040100 Sobic004G040100 Sobic002G405100 Sobic002G405100 Sobic004G040100--Sobic002G405100 Sobic003G419900 Sobic003G419900 Sobic004G040100--Sobic003G419900 Sobic003G408000 Sobic003G408000 Sobic004G040100--Sobic003G408000 Sobic009G174700 Sobic009G174700 Sobic004G040100--Sobic009G174700 Sobic001G029600 Sobic001G029600 Sobic004G040100--Sobic001G029600 Sobic006G140500 Sobic006G140500 Sobic004G040100--Sobic006G140500 Sobic002G133900 Sobic002G133900 Sobic004G040100--Sobic002G133900 Sobic003G203000 Sobic003G203000 Sobic004G040100--Sobic003G203000 Sobic004G202200 Sobic004G202200 Sobic004G040100--Sobic004G202200 Sobic002G405100--Sobic002G133900 Sobic005G100300 Sobic005G100300 Sobic002G405100--Sobic005G100300 Sobic002G401800 Sobic002G401800 Sobic002G405100--Sobic002G401800 Sobic004G353100 Sobic004G353100 Sobic002G405100--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic002G405100--Sobic010G035400 Sobic010G201600 Sobic010G201600 Sobic002G405100--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic002G405100--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic002G405100--Sobic004G336200 Sobic007G052400 Sobic007G052400 Sobic002G405100--Sobic007G052400 Sobic007G181400 Sobic007G181400 Sobic003G419900--Sobic007G181400 Sobic003G419900--Sobic004G353100 Sobic004G359600 Sobic004G359600 Sobic003G419900--Sobic004G359600 Sobic003G419900--Sobic004G202200 Sobic002G233700 Sobic002G233700 Sobic003G419900--Sobic002G233700 Sobic003G419900--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic003G419900--Sobic004G028300 Sobic001G289500 Sobic001G289500 Sobic003G419900--Sobic001G289500 Sobic001G015200 Sobic001G015200 Sobic003G419900--Sobic001G015200 Sobic001G405700 Sobic001G405700 Sobic003G408000--Sobic001G405700 Sobic004G012900 Sobic004G012900 Sobic003G408000--Sobic004G012900 Sobic003G408000--Sobic003G419900 Sobic009G131800 Sobic009G131800 Sobic003G408000--Sobic009G131800 Sobic008G039600 Sobic008G039600 Sobic003G408000--Sobic008G039600 Sobic003G077400 Sobic003G077400 Sobic003G408000--Sobic003G077400 Sobic003G408000--Sobic002G405100 Sobic009G055800 Sobic009G055800 Sobic003G408000--Sobic009G055800 Sobic003G408000--Sobic002G401800 Sobic009G174700--Sobic002G133900 Sobic009G174700--Sobic010G201600 Sobic009G174700--Sobic002G405100 Sobic001G175700 Sobic001G175700 Sobic009G174700--Sobic001G175700 Sobic006G235350 Sobic006G235350 Sobic009G174700--Sobic006G235350 Sobic009G174700--Sobic009G131800 Sobic002G272100 Sobic002G272100 Sobic009G174700--Sobic002G272100 Sobic009G174700--Sobic002G233700 Sobic003G070900 Sobic003G070900 Sobic009G174700--Sobic003G070900 Sobic001G029600--Sobic006G140500 Sobic001G029600--Sobic004G202200 Sobic004G267700 Sobic004G267700 Sobic001G029600--Sobic004G267700 Sobic009G119300 Sobic009G119300 Sobic001G029600--Sobic009G119300 Sobic004G268400 Sobic004G268400 Sobic001G029600--Sobic004G268400 Sobic008G088821 Sobic008G088821 Sobic001G029600--Sobic008G088821 Sobic003G380200 Sobic003G380200 Sobic001G029600--Sobic003G380200 Sobic009G133700 Sobic009G133700 Sobic001G029600--Sobic009G133700 Sobic001G029600--Sobic001G015200 Sobic006G140500--Sobic008G088821 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic006G140500--Sobic001G029600 Sobic006G140500--Sobic009G119300 Sobic006G140500--Sobic004G028300 Sobic006G140500--Sobic004G202200 Sobic005G028800 Sobic005G028800 Sobic006G140500--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic006G140500--Sobic007G166300 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic003G287900 Sobic003G287900 Sobic002G133900--Sobic003G287900 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic002G133900--Sobic002G028400 Sobic007G103400 Sobic007G103400 Sobic002G133900--Sobic007G103400 Sobic009G170200 Sobic009G170200 Sobic002G133900--Sobic009G170200 Sobic007G107700 Sobic007G107700 Sobic003G203000--Sobic007G107700 Sobic003G203000--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G203000--Sobic007G135800 Sobic003G203000--Sobic004G202200 Sobic003G409700 Sobic003G409700 Sobic003G203000--Sobic003G409700 Sobic003G203000--Sobic002G133900 Sobic007G157300 Sobic007G157300 Sobic003G203000--Sobic007G157300 Sobic006G158700 Sobic006G158700 Sobic003G203000--Sobic006G158700 Sobic009G237000 Sobic009G237000 Sobic003G203000--Sobic009G237000 Sobic004G202200--Sobic001G289500 Sobic004G202200--Sobic006G235350 Sobic004G202200--Sobic006G140500 Sobic004G202200--Sobic009G133700 Sobic004G202200--Sobic001G029600 Sobic003G094100 Sobic003G094100 Sobic004G202200--Sobic003G094100 Sobic003G005000 Sobic003G005000 Sobic004G202200--Sobic003G005000 Sobic004G202200--Sobic001G015200 Sobic004G202200--Sobic007G181400
Octagon: transcription factors


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