Gene annotation
Transcriptome id Sobic.009G255300.1
Synonym NCLPP5, CLPR1, Sb09g030550, SVR2
Functional annotation OsClp8 - Putative Clp protease homologue, expressed
UniProt C5YWZ8
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF18
NCBI CDD KOG0840; ATP-dependent Clp protease, proteolytic subunit
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49970 : CLP protease proteolytic subunit 1
RAP-DB (Rice) LOC_Os05g51450.1 : OsClp8 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a057154 , Zm00025a044758
Brachypodium KQK04587
Barley HORVU1Hr1G094480.2 , HORVU1Hr1G094480.3 , HORVU1Hr1G094480.1 , HORVU1Hr1G094480.6 , HORVU1Hr1G094480.4 , HORVU1Hr1G094480.5
Wheat TraesCS1D02G445300 , TraesCS1B02G472100 , TraesCS1A02G437500 , TraesCS1A02G437500
Populus -


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cDNA sequences
Sobic.009G255300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
2 Sobic.007G013500 expressed protein -
3 Sobic.006G278500 class I glutamine amidotransferase, putative, expressed K01951: guaA, GMP synthase (glutamine-hydrolysing)
4 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
6 Sobic.004G072000 ribosome, putative, expressed -
7 Sobic.010G073300 expressed protein -
8 Sobic.003G440400 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.008G139900 expressed protein -
10 Sobic.004G327500 hydrolase, NUDIX family, domain containing protein, expressed -
11 Sobic.001G115800 expressed protein -
12 Sobic.005G061400 expressed protein -
13 Sobic.K044200 - -
14 Sobic.004G330400 expressed protein -
15 Sobic.009G154000 ATOFP18/OFP18, putative, expressed -
16 Sobic.002G284901 - -
17 Sobic.001G017900 FAD binding protein, putative, expressed -
18 Sobic.003G120400 expressed protein -
19 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
20 Sobic.002G387100 X8 domain containing protein, expressed -


Gene co-expression network
sample Sobic009G255300 Sobic009G255300 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic010G036000 Sobic010G036000 Sobic009G255300--Sobic010G036000 Sobic002G285300 Sobic002G285300 Sobic009G255300--Sobic002G285300 Sobic004G072000 Sobic004G072000 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic003G440400 Sobic003G440400 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900 Sobic003G179100--Sobic010G073300 Sobic002G284901 Sobic002G284901 Sobic003G179100--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic003G179100--Sobic002G320900 Sobic003G120400 Sobic003G120400 Sobic003G179100--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic003G179100--Sobic001G525000 Sobic006G065700 Sobic006G065700 Sobic003G179100--Sobic006G065700 Sobic002G430200 Sobic002G430200 Sobic003G179100--Sobic002G430200 Sobic002G387100 Sobic002G387100 Sobic003G179100--Sobic002G387100 Sobic001G519300 Sobic001G519300 Sobic003G179100--Sobic001G519300 Sobic007G013500--Sobic003G179100 Sobic001G115800 Sobic001G115800 Sobic007G013500--Sobic001G115800 Sobic007G013500--Sobic010G073300 Sobic007G013500--Sobic009G255300 Sobic007G013500--Sobic006G278500 Sobic004G192700 Sobic004G192700 Sobic007G013500--Sobic004G192700 Sobic006G139600 Sobic006G139600 Sobic007G013500--Sobic006G139600 Sobic007G013500--Sobic001G519300 Sobic004G275500 Sobic004G275500 Sobic007G013500--Sobic004G275500 Sobic006G278500--Sobic003G179100 Sobic006G278500--Sobic002G430200 Sobic006G278500--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic006G278500--Sobic007G122300 Sobic006G278500--Sobic010G073300 Sobic001G213400 Sobic001G213400 Sobic006G278500--Sobic001G213400 Sobic002G284800 Sobic002G284800 Sobic006G278500--Sobic002G284800 Sobic006G278500--Sobic002G284901 Sobic003G368150 Sobic003G368150 Sobic006G278500--Sobic003G368150 Sobic010G036000--Sobic003G179100 Sobic010G036000--Sobic002G284901 Sobic010G036000--Sobic010G073300 Sobic010G036000--Sobic001G525000 Sobic010G036000--Sobic002G430200 Sobic010G036000--Sobic003G120400 Sobic010G036000--Sobic002G387100 Sobic010G036000--Sobic002G320900 Sobic010G036000--Sobic006G065700 Sobic004G284400 Sobic004G284400 Sobic002G285300--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic002G285300--Sobic003G397000 Sobic001G017900 Sobic001G017900 Sobic002G285300--Sobic001G017900 Sobic006G247500 Sobic006G247500 Sobic002G285300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic002G285300--Sobic009G154000 Sobic002G320200 Sobic002G320200 Sobic002G285300--Sobic002G320200 Sobic002G285300--Sobic010G036000 SobicK044200 SobicK044200 Sobic002G285300--SobicK044200 Sobic006G192400 Sobic006G192400 Sobic002G285300--Sobic006G192400 Sobic010G208000 Sobic010G208000 Sobic004G072000--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic004G072000--Sobic004G034500 Sobic010G244600 Sobic010G244600 Sobic004G072000--Sobic010G244600 Sobic004G072000--Sobic008G139900 Sobic007G204400 Sobic007G204400 Sobic004G072000--Sobic007G204400 Sobic004G072000--Sobic001G115800 Sobic008G131200 Sobic008G131200 Sobic004G072000--Sobic008G131200 Sobic006G204000 Sobic006G204000 Sobic004G072000--Sobic006G204000 Sobic010G258700 Sobic010G258700 Sobic004G072000--Sobic010G258700 Sobic010G073300--Sobic002G284901 Sobic010G073300--Sobic003G120400 Sobic010G073300--Sobic001G525000 Sobic010G073300--Sobic002G320900 Sobic010G073300--Sobic002G430200 Sobic001G130900 Sobic001G130900 Sobic010G073300--Sobic001G130900 Sobic003G200501 Sobic003G200501 Sobic010G073300--Sobic003G200501 Sobic010G073300--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic010G073300--Sobic002G210200 Sobic004G008000 Sobic004G008000 Sobic003G440400--Sobic004G008000 Sobic003G440400--Sobic003G179100 Sobic008G131800 Sobic008G131800 Sobic003G440400--Sobic008G131800 Sobic003G440400--Sobic002G430200 Sobic004G239000 Sobic004G239000 Sobic003G440400--Sobic004G239000 Sobic004G330400 Sobic004G330400 Sobic003G440400--Sobic004G330400 Sobic007G111600 Sobic007G111600 Sobic003G440400--Sobic007G111600 Sobic003G440400--Sobic002G284800 Sobic003G440400--Sobic002G387100 Sobic008G139900--Sobic004G330400 Sobic001G493800 Sobic001G493800 Sobic008G139900--Sobic001G493800 Sobic008G139900--SobicK044200 Sobic008G028500 Sobic008G028500 Sobic008G139900--Sobic008G028500 Sobic003G229150 Sobic003G229150 Sobic008G139900--Sobic003G229150 Sobic005G102100 Sobic005G102100 Sobic008G139900--Sobic005G102100 Sobic002G206200 Sobic002G206200 Sobic008G139900--Sobic002G206200 Sobic008G139900--Sobic006G204000 Sobic003G396900 Sobic003G396900 Sobic008G139900--Sobic003G396900
Octagon: transcription factors


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