Gene annotation
Transcriptome id Sobic.001G017900.1
Synonym Sb01g001740
Functional annotation FAD binding protein, putative, expressed
UniProt C5WT15
Pfam -
Panther DB PTHR35305 PTHR35305:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49645 : -
RAP-DB (Rice) LOC_Os07g16140.1 : FAD binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a016352
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G017900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G192400 U-box domain-containing protein, putative, expressed -
2 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
4 Sobic.007G156101 - -
5 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.006G157300 expressed protein -
7 Sobic.004G284400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
8 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.003G126500 hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
12 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
13 Sobic.004G327500 hydrolase, NUDIX family, domain containing protein, expressed -
14 Sobic.007G159800 DNA binding protein, putative, expressed -
15 Sobic.003G149500 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
16 Sobic.003G221300 - -
17 Sobic.004G354700 PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
18 Sobic.009G198400 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
19 Sobic.003G397000 expressed protein -
20 Sobic.007G131900 expressed protein -


Gene co-expression network
sample Sobic001G017900 Sobic001G017900 Sobic006G192400 Sobic006G192400 Sobic001G017900--Sobic006G192400 Sobic002G285300 Sobic002G285300 Sobic001G017900--Sobic002G285300 Sobic008G163700 Sobic008G163700 Sobic001G017900--Sobic008G163700 Sobic007G156101 Sobic007G156101 Sobic001G017900--Sobic007G156101 Sobic003G267900 Sobic003G267900 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic004G284400 Sobic004G284400 Sobic001G017900--Sobic004G284400 Sobic009G255300 Sobic009G255300 Sobic001G017900--Sobic009G255300 Sobic010G036000 Sobic010G036000 Sobic001G017900--Sobic010G036000 Sobic006G192400--Sobic001G017900 Sobic006G192400--Sobic002G285300 Sobic006G192400--Sobic003G267900 Sobic006G192400--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic006G192400--Sobic003G397000 Sobic003G126500 Sobic003G126500 Sobic006G192400--Sobic003G126500 Sobic006G192400--Sobic006G157300 Sobic001G061500 Sobic001G061500 Sobic006G192400--Sobic001G061500 Sobic006G192400--Sobic007G156101 Sobic002G285300--Sobic004G284400 Sobic002G285300--Sobic003G397000 Sobic002G285300--Sobic001G017900 Sobic006G247500 Sobic006G247500 Sobic002G285300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic002G285300--Sobic009G154000 Sobic002G320200 Sobic002G320200 Sobic002G285300--Sobic002G320200 Sobic002G285300--Sobic010G036000 SobicK044200 SobicK044200 Sobic002G285300--SobicK044200 Sobic002G285300--Sobic006G192400 Sobic008G163700--Sobic001G017900 Sobic008G163700--Sobic002G285300 Sobic007G159800 Sobic007G159800 Sobic008G163700--Sobic007G159800 Sobic008G163700--Sobic007G156101 Sobic001G038500 Sobic001G038500 Sobic008G163700--Sobic001G038500 Sobic008G163700--Sobic009G255300 Sobic010G092100 Sobic010G092100 Sobic008G163700--Sobic010G092100 Sobic007G017400 Sobic007G017400 Sobic008G163700--Sobic007G017400 Sobic001G361900 Sobic001G361900 Sobic008G163700--Sobic001G361900 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G156101--Sobic007G017400 Sobic007G156101--Sobic002G285300 Sobic007G156101--Sobic006G192400 Sobic007G156101--Sobic008G163700 Sobic007G156101--Sobic007G159800 Sobic007G156101--Sobic004G284400 Sobic002G337300 Sobic002G337300 Sobic007G156101--Sobic002G337300 Sobic003G267900--Sobic007G156101 Sobic003G267900--Sobic002G285300 Sobic003G267900--Sobic001G017900 Sobic003G267900--Sobic006G192400 Sobic003G267900--Sobic004G284400 Sobic003G267900--Sobic007G017400 Sobic003G267900--Sobic010G036000 Sobic003G267900--Sobic008G163700 Sobic003G267900--Sobic003G397000 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic004G284400--Sobic002G285300 Sobic004G230900 Sobic004G230900 Sobic004G284400--Sobic004G230900 Sobic008G061000 Sobic008G061000 Sobic004G284400--Sobic008G061000 Sobic004G284400--Sobic009G154000 Sobic004G128600 Sobic004G128600 Sobic004G284400--Sobic004G128600 Sobic001G200500 Sobic001G200500 Sobic004G284400--Sobic001G200500 Sobic005G102100 Sobic005G102100 Sobic004G284400--Sobic005G102100 Sobic001G193400 Sobic001G193400 Sobic004G284400--Sobic001G193400 Sobic008G133100 Sobic008G133100 Sobic004G284400--Sobic008G133100 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic009G255300--Sobic010G036000 Sobic009G255300--Sobic002G285300 Sobic004G072000 Sobic004G072000 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic003G440400 Sobic003G440400 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900 Sobic010G036000--Sobic003G179100 Sobic002G284901 Sobic002G284901 Sobic010G036000--Sobic002G284901 Sobic010G036000--Sobic010G073300 Sobic001G525000 Sobic001G525000 Sobic010G036000--Sobic001G525000 Sobic002G430200 Sobic002G430200 Sobic010G036000--Sobic002G430200 Sobic003G120400 Sobic003G120400 Sobic010G036000--Sobic003G120400 Sobic002G387100 Sobic002G387100 Sobic010G036000--Sobic002G387100 Sobic002G320900 Sobic002G320900 Sobic010G036000--Sobic002G320900 Sobic006G065700 Sobic006G065700 Sobic010G036000--Sobic006G065700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.