Gene annotation
Transcriptome id Sobic.003G179100.9,Sobic.003G179100.8,Sobic.003G179100.10,Sobic.003G179100.5,Sobic.003G179100.11,Sobic.003G179100.7,Sobic.003G179100.6,Sobic.003G179100.2
Synonym PRP40A, Sb03g023440, ATPRP40A
Functional annotation protein binding protein, putative, expressed
UniProt A0A1W0VXU5 , A0A1B6Q3Z0 , A0A1B6Q405
Pfam PF00397 PF01846
Panther DB PTHR11864 PTHR11864:SF0
NCBI CDD KOG0152; Spliceosomal protein FBP11/Splicing factor PRP40
KEGG Orthology K12821; PRPF40, pre-mRNA-processing factor 40
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G44910 : pre-mRNA-processing protein 40A
RAP-DB (Rice) LOC_Os01g34780.1,LOC_Os01g34780.2 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a028863 , Zm00025a028856
Brachypodium KQK17847
Barley -
Wheat TraesCS6B02G040400 , TraesCSU02G079600 , TraesCSU02G079600 , TraesCS4B02G082500 , TraesCS4D02G081000 , TraesCS4A02G233200 , TraesCS6D02G032100 , TraesCS6D02G032100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073300 expressed protein -
2 Sobic.002G284901 - -
3 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
4 Sobic.003G120400 expressed protein -
5 Sobic.001G525000 polygalacturonase, putative, expressed -
6 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
7 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
8 Sobic.002G387100 X8 domain containing protein, expressed -
9 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
10 Sobic.001G130900 expressed protein -
11 Sobic.003G200501 - K11252: histone H2B
12 Sobic.006G278500 class I glutamine amidotransferase, putative, expressed K01951: guaA, GMP synthase (glutamine-hydrolysing)
13 Sobic.007G093400 - -
14 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.001G460800 nucleotidyltransferase, putative, expressed -
16 Sobic.007G122300 - -
17 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
18 Sobic.003G367401 - -
19 Sobic.010G201000 - -
20 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -


Gene co-expression network
sample Sobic003G179100 Sobic003G179100 Sobic010G073300 Sobic010G073300 Sobic003G179100--Sobic010G073300 Sobic002G284901 Sobic002G284901 Sobic003G179100--Sobic002G284901 Sobic002G320900 Sobic002G320900 Sobic003G179100--Sobic002G320900 Sobic003G120400 Sobic003G120400 Sobic003G179100--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic003G179100--Sobic001G525000 Sobic006G065700 Sobic006G065700 Sobic003G179100--Sobic006G065700 Sobic002G430200 Sobic002G430200 Sobic003G179100--Sobic002G430200 Sobic002G387100 Sobic002G387100 Sobic003G179100--Sobic002G387100 Sobic001G519300 Sobic001G519300 Sobic003G179100--Sobic001G519300 Sobic010G073300--Sobic002G284901 Sobic010G073300--Sobic003G120400 Sobic010G073300--Sobic001G525000 Sobic010G073300--Sobic002G320900 Sobic010G073300--Sobic002G430200 Sobic001G130900 Sobic001G130900 Sobic010G073300--Sobic001G130900 Sobic003G200501 Sobic003G200501 Sobic010G073300--Sobic003G200501 Sobic010G073300--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic010G073300--Sobic002G210200 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic007G093400 Sobic007G093400 Sobic002G284901--Sobic007G093400 Sobic002G284901--Sobic006G065700 Sobic003G067500 Sobic003G067500 Sobic002G284901--Sobic003G067500 Sobic002G284901--Sobic002G430200 Sobic002G320900--Sobic002G284901 Sobic002G320900--Sobic001G525000 Sobic002G320900--Sobic003G120400 Sobic002G320900--Sobic002G210200 Sobic002G320900--Sobic003G200501 Sobic002G320900--Sobic007G093400 Sobic002G320900--Sobic006G065700 Sobic001G460800 Sobic001G460800 Sobic002G320900--Sobic001G460800 Sobic003G367401 Sobic003G367401 Sobic002G320900--Sobic003G367401 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G120400--Sobic003G367401 Sobic001G525000--Sobic003G120400 Sobic001G525000--Sobic002G320900 Sobic001G525000--Sobic002G430200 Sobic001G525000--Sobic002G284901 Sobic001G525000--Sobic003G367401 Sobic001G525000--Sobic002G387100 Sobic001G525000--Sobic002G210200 Sobic001G525000--Sobic003G200501 Sobic001G525000--Sobic007G093400 Sobic006G065700--Sobic002G320900 Sobic006G065700--Sobic002G284901 Sobic006G065700--Sobic007G093400 Sobic006G065700--Sobic002G210200 Sobic006G065700--Sobic003G200501 Sobic006G065700--Sobic003G120400 Sobic006G065700--Sobic001G525000 Sobic010G074980 Sobic010G074980 Sobic006G065700--Sobic010G074980 Sobic003G427500 Sobic003G427500 Sobic006G065700--Sobic003G427500 Sobic002G430200--Sobic002G387100 Sobic007G122300 Sobic007G122300 Sobic002G430200--Sobic007G122300 Sobic003G099500 Sobic003G099500 Sobic002G430200--Sobic003G099500 Sobic002G430200--Sobic003G367401 Sobic002G430200--Sobic001G525000 Sobic004G239000 Sobic004G239000 Sobic002G430200--Sobic004G239000 Sobic002G430200--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic002G430200--Sobic010G201000 Sobic002G284800 Sobic002G284800 Sobic002G430200--Sobic002G284800 Sobic002G387100--Sobic002G430200 Sobic002G387100--Sobic007G122300 Sobic002G387100--Sobic003G099500 Sobic002G387100--Sobic004G239000 Sobic002G387100--Sobic001G525000 Sobic002G387100--Sobic003G367401 Sobic002G387100--Sobic002G284800 Sobic003G368150 Sobic003G368150 Sobic002G387100--Sobic003G368150 Sobic002G387100--Sobic003G120400 Sobic007G224600 Sobic007G224600 Sobic001G519300--Sobic007G224600 Sobic001G519300--Sobic002G320900 Sobic001G519300--Sobic002G284901 Sobic001G223400 Sobic001G223400 Sobic001G519300--Sobic001G223400 Sobic001G519300--Sobic006G065700 Sobic007G221800 Sobic007G221800 Sobic001G519300--Sobic007G221800 Sobic001G519300--Sobic002G210200 Sobic001G519300--Sobic003G200501 Sobic001G519300--Sobic003G120400
Octagon: transcription factors


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