Gene annotation
Transcriptome id Sobic.008G163700.3,Sobic.008G163700.1
Synonym Sb08g021000, SRL2, PIF4
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6PE59
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF86
NCBI CDD -
KEGG Orthology K16189; phytochrome-interacting factor 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43010 : phytochrome interacting factor 4
RAP-DB (Rice) LOC_Os12g41650.2 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004664 , Zm00025a007316
Brachypodium KQK14025
Barley HORVU5Hr1G093310.22 , HORVU5Hr1G093310.23 , HORVU5Hr1G093310.20 , HORVU5Hr1G093310.21 , HORVU5Hr1G093310.17 , HORVU5Hr1G093310.16 , HORVU5Hr1G093310.15 , HORVU5Hr1G093310.14 , HORVU5Hr1G093310.13 , HORVU5Hr1G093310.12 , HORVU5Hr1G093310.11 , HORVU5Hr1G093310.10 , HORVU5Hr1G093310.19 , HORVU5Hr1G093310.18 , HORVU5Hr1G093310.9 , HORVU5Hr1G093310.8 , HORVU5Hr1G093310.7 , HORVU5Hr1G093310.6 , HORVU5Hr1G093310.5 , HORVU5Hr1G093310.4 , HORVU5Hr1G093310.3 , HORVU5Hr1G093310.2 , HORVU5Hr1G093310.1 , HORVU5Hr1G011780.14 , HORVU5Hr1G011780.15 , HORVU5Hr1G011780.10 , HORVU5Hr1G011780.11 , HORVU5Hr1G011780.12 , HORVU5Hr1G011780.13 , HORVU1Hr1G054260.8 , HORVU1Hr1G054260.9 , HORVU1Hr1G054260.2 , HORVU1Hr1G054260.3 , HORVU1Hr1G054260.1 , HORVU1Hr1G054260.6 , HORVU1Hr1G054260.4 , HORVU1Hr1G054260.5 , HORVU5Hr1G011780.6 , HORVU5Hr1G011780.5 , HORVU5Hr1G011780.3 , HORVU5Hr1G011780.1 , HORVU5Hr1G011780.8 , HORVU5Hr1G011780.9 , HORVU1Hr1G054260.18 , HORVU1Hr1G054260.19 , HORVU1Hr1G054260.10 , HORVU1Hr1G054260.11 , HORVU1Hr1G054260.12 , HORVU1Hr1G054260.14 , HORVU1Hr1G054260.15 , HORVU1Hr1G054260.16 , HORVU1Hr1G054260.17
Wheat TraesCS5D02G386500 , TraesCS5D02G386500 , TraesCS5A02G376500 , TraesCS5D02G060300 , TraesCS5B02G380200 , TraesCS5A02G049600 , TraesCS5B02G054800 , TraesCS5B02G054800
Populus PNT47990 , PNT47989 , PNT47991 , PNT47993 , PNT47992 , PNT47995 , PNT47994


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017900 FAD binding protein, putative, expressed -
2 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.007G159800 DNA binding protein, putative, expressed -
4 Sobic.007G156101 - -
5 Sobic.001G038500 ANT1, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
6 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.010G092100 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
8 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R
9 Sobic.001G361900 ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
10 Sobic.004G354700 PCF-like (ClassI) Subclade 1 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
11 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.009G213300 OsPOP10 - Putative Prolyl Oligopeptidase homologue, expressed -
13 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
14 Sobic.003G060400 transcription regulator, putative, expressed -
15 Sobic.006G192400 U-box domain-containing protein, putative, expressed -
16 Sobic.009G125500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G284400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
18 Sobic.007G072800 OsFBX275 - F-box domain containing protein, expressed -
19 Sobic.010G095500 NHL repeat-containing protein, putative, expressed -
20 Sobic.003G221300 - -


Gene co-expression network
sample Sobic008G163700 Sobic008G163700 Sobic001G017900 Sobic001G017900 Sobic008G163700--Sobic001G017900 Sobic002G285300 Sobic002G285300 Sobic008G163700--Sobic002G285300 Sobic007G159800 Sobic007G159800 Sobic008G163700--Sobic007G159800 Sobic007G156101 Sobic007G156101 Sobic008G163700--Sobic007G156101 Sobic001G038500 Sobic001G038500 Sobic008G163700--Sobic001G038500 Sobic009G255300 Sobic009G255300 Sobic008G163700--Sobic009G255300 Sobic010G092100 Sobic010G092100 Sobic008G163700--Sobic010G092100 Sobic007G017400 Sobic007G017400 Sobic008G163700--Sobic007G017400 Sobic001G361900 Sobic001G361900 Sobic008G163700--Sobic001G361900 Sobic006G192400 Sobic006G192400 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic001G017900--Sobic008G163700 Sobic001G017900--Sobic007G156101 Sobic003G267900 Sobic003G267900 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic004G284400 Sobic004G284400 Sobic001G017900--Sobic004G284400 Sobic001G017900--Sobic009G255300 Sobic010G036000 Sobic010G036000 Sobic001G017900--Sobic010G036000 Sobic002G285300--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic002G285300--Sobic003G397000 Sobic002G285300--Sobic001G017900 Sobic006G247500 Sobic006G247500 Sobic002G285300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic002G285300--Sobic009G154000 Sobic002G320200 Sobic002G320200 Sobic002G285300--Sobic002G320200 Sobic002G285300--Sobic010G036000 SobicK044200 SobicK044200 Sobic002G285300--SobicK044200 Sobic002G285300--Sobic006G192400 Sobic007G159800--Sobic001G038500 Sobic002G376800 Sobic002G376800 Sobic007G159800--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic007G159800--Sobic003G057800 Sobic009G230400 Sobic009G230400 Sobic007G159800--Sobic009G230400 Sobic006G204200 Sobic006G204200 Sobic007G159800--Sobic006G204200 Sobic008G105500 Sobic008G105500 Sobic007G159800--Sobic008G105500 Sobic001G056300 Sobic001G056300 Sobic007G159800--Sobic001G056300 Sobic007G159800--Sobic008G163700 Sobic007G159800--Sobic010G092100 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G156101--Sobic007G017400 Sobic007G156101--Sobic002G285300 Sobic007G156101--Sobic006G192400 Sobic007G156101--Sobic008G163700 Sobic007G156101--Sobic007G159800 Sobic007G156101--Sobic004G284400 Sobic002G337300 Sobic002G337300 Sobic007G156101--Sobic002G337300 Sobic001G038500--Sobic010G092100 Sobic001G038500--Sobic007G159800 Sobic001G038500--Sobic006G204200 Sobic002G246600 Sobic002G246600 Sobic001G038500--Sobic002G246600 Sobic001G038500--Sobic001G361900 Sobic001G038500--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic001G038500--Sobic003G357500 Sobic003G357600 Sobic003G357600 Sobic001G038500--Sobic003G357600 Sobic001G038500--Sobic008G163700 Sobic003G179100 Sobic003G179100 Sobic009G255300--Sobic003G179100 Sobic007G013500 Sobic007G013500 Sobic009G255300--Sobic007G013500 Sobic006G278500 Sobic006G278500 Sobic009G255300--Sobic006G278500 Sobic009G255300--Sobic010G036000 Sobic009G255300--Sobic002G285300 Sobic004G072000 Sobic004G072000 Sobic009G255300--Sobic004G072000 Sobic010G073300 Sobic010G073300 Sobic009G255300--Sobic010G073300 Sobic003G440400 Sobic003G440400 Sobic009G255300--Sobic003G440400 Sobic008G139900 Sobic008G139900 Sobic009G255300--Sobic008G139900 Sobic010G092100--Sobic001G038500 Sobic010G092100--Sobic001G361900 Sobic009G010700 Sobic009G010700 Sobic010G092100--Sobic009G010700 Sobic010G092100--Sobic007G159800 Sobic003G178700 Sobic003G178700 Sobic010G092100--Sobic003G178700 Sobic002G376700 Sobic002G376700 Sobic010G092100--Sobic002G376700 Sobic010G092100--Sobic006G204200 Sobic001G084600 Sobic001G084600 Sobic010G092100--Sobic001G084600 Sobic010G092100--Sobic008G163700 Sobic007G017400--Sobic007G156101 Sobic001G237700 Sobic001G237700 Sobic007G017400--Sobic001G237700 Sobic007G017400--Sobic002G337300 Sobic004G134500 Sobic004G134500 Sobic007G017400--Sobic004G134500 Sobic007G017400--Sobic003G267900 Sobic007G017400--Sobic001G017900 Sobic001G423700 Sobic001G423700 Sobic007G017400--Sobic001G423700 Sobic003G408800 Sobic003G408800 Sobic007G017400--Sobic003G408800 Sobic007G017400--Sobic007G159800 Sobic001G361900--Sobic010G092100 Sobic001G361900--Sobic001G038500 Sobic001G361900--Sobic007G159800 Sobic001G361900--Sobic006G204200 Sobic002G104000 Sobic002G104000 Sobic001G361900--Sobic002G104000 Sobic001G361900--Sobic008G163700 Sobic001G217700 Sobic001G217700 Sobic001G361900--Sobic001G217700 Sobic005G036700 Sobic005G036700 Sobic001G361900--Sobic005G036700 Sobic004G315800 Sobic004G315800 Sobic001G361900--Sobic004G315800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.