Gene annotation
Transcriptome id Sobic.002G285300.1
Synonym Sb02g031770, SbSAUR20;small auxin up RNA, SbSAUR20, small auxin up RNA
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database" (PubMedID : 20499123)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsSAUR53 - Auxin-responsive SAUR gene family member, expressed
UniProt C5X713
Pfam PF02519
Panther DB PTHR31175
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT1G29500 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os09g37480.1 : OsSAUR53 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G284400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.003G397000 expressed protein -
3 Sobic.001G017900 FAD binding protein, putative, expressed -
4 Sobic.006G247500 terpene synthase, putative, expressed -
5 Sobic.009G154000 ATOFP18/OFP18, putative, expressed -
6 Sobic.002G320200 cytochrome P450, putative, expressed -
7 Sobic.010G036000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.K044200 - -
9 Sobic.006G192400 U-box domain-containing protein, putative, expressed -
10 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
11 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.006G157300 expressed protein -
13 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
14 Sobic.004G330400 expressed protein -
15 Sobic.007G156101 - -
16 Sobic.008G139900 expressed protein -
17 Sobic.009G255300 OsClp8 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.001G493800 expressed protein -
19 Sobic.008G028500 expressed protein -
20 Sobic.002G425900 expressed protein -


Gene co-expression network
sample Sobic002G285300 Sobic002G285300 Sobic004G284400 Sobic004G284400 Sobic002G285300--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic002G285300--Sobic003G397000 Sobic001G017900 Sobic001G017900 Sobic002G285300--Sobic001G017900 Sobic006G247500 Sobic006G247500 Sobic002G285300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic002G285300--Sobic009G154000 Sobic002G320200 Sobic002G320200 Sobic002G285300--Sobic002G320200 Sobic010G036000 Sobic010G036000 Sobic002G285300--Sobic010G036000 SobicK044200 SobicK044200 Sobic002G285300--SobicK044200 Sobic006G192400 Sobic006G192400 Sobic002G285300--Sobic006G192400 Sobic004G284400--Sobic002G285300 Sobic004G230900 Sobic004G230900 Sobic004G284400--Sobic004G230900 Sobic008G061000 Sobic008G061000 Sobic004G284400--Sobic008G061000 Sobic004G284400--Sobic009G154000 Sobic004G128600 Sobic004G128600 Sobic004G284400--Sobic004G128600 Sobic001G200500 Sobic001G200500 Sobic004G284400--Sobic001G200500 Sobic005G102100 Sobic005G102100 Sobic004G284400--Sobic005G102100 Sobic001G193400 Sobic001G193400 Sobic004G284400--Sobic001G193400 Sobic008G133100 Sobic008G133100 Sobic004G284400--Sobic008G133100 Sobic003G397000--Sobic002G320200 Sobic008G031600 Sobic008G031600 Sobic003G397000--Sobic008G031600 Sobic001G460700 Sobic001G460700 Sobic003G397000--Sobic001G460700 Sobic003G081400 Sobic003G081400 Sobic003G397000--Sobic003G081400 Sobic003G397000--Sobic002G285300 Sobic010G068300 Sobic010G068300 Sobic003G397000--Sobic010G068300 Sobic006G167200 Sobic006G167200 Sobic003G397000--Sobic006G167200 Sobic001G084500 Sobic001G084500 Sobic003G397000--Sobic001G084500 Sobic010G029200 Sobic010G029200 Sobic003G397000--Sobic010G029200 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic008G163700 Sobic008G163700 Sobic001G017900--Sobic008G163700 Sobic007G156101 Sobic007G156101 Sobic001G017900--Sobic007G156101 Sobic003G267900 Sobic003G267900 Sobic001G017900--Sobic003G267900 Sobic006G157300 Sobic006G157300 Sobic001G017900--Sobic006G157300 Sobic001G017900--Sobic004G284400 Sobic009G255300 Sobic009G255300 Sobic001G017900--Sobic009G255300 Sobic001G017900--Sobic010G036000 Sobic006G247500--SobicK044200 Sobic006G247500--Sobic009G154000 Sobic002G425900 Sobic002G425900 Sobic006G247500--Sobic002G425900 Sobic001G180300 Sobic001G180300 Sobic006G247500--Sobic001G180300 Sobic008G028500 Sobic008G028500 Sobic006G247500--Sobic008G028500 Sobic010G178900 Sobic010G178900 Sobic006G247500--Sobic010G178900 Sobic006G247500--Sobic004G128600 Sobic004G330400 Sobic004G330400 Sobic006G247500--Sobic004G330400 Sobic006G187600 Sobic006G187600 Sobic006G247500--Sobic006G187600 Sobic009G154000--SobicK044200 Sobic009G154000--Sobic002G425900 Sobic009G154000--Sobic004G128600 Sobic010G114400 Sobic010G114400 Sobic009G154000--Sobic010G114400 Sobic009G154000--Sobic004G330400 Sobic010G224800 Sobic010G224800 Sobic009G154000--Sobic010G224800 Sobic002G284800 Sobic002G284800 Sobic009G154000--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic009G154000--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic009G154000--Sobic003G368150 Sobic002G320200--Sobic003G397000 Sobic009G127600 Sobic009G127600 Sobic002G320200--Sobic009G127600 Sobic002G320200--Sobic003G081400 Sobic001G493800 Sobic001G493800 Sobic002G320200--Sobic001G493800 Sobic002G320200--Sobic010G114400 Sobic002G320200--Sobic008G031600 Sobic002G320200--Sobic006G167200 Sobic002G156300 Sobic002G156300 Sobic002G320200--Sobic002G156300 Sobic002G320200--Sobic009G154000 Sobic003G179100 Sobic003G179100 Sobic010G036000--Sobic003G179100 Sobic002G284901 Sobic002G284901 Sobic010G036000--Sobic002G284901 Sobic010G073300 Sobic010G073300 Sobic010G036000--Sobic010G073300 Sobic001G525000 Sobic001G525000 Sobic010G036000--Sobic001G525000 Sobic002G430200 Sobic002G430200 Sobic010G036000--Sobic002G430200 Sobic003G120400 Sobic003G120400 Sobic010G036000--Sobic003G120400 Sobic002G387100 Sobic002G387100 Sobic010G036000--Sobic002G387100 Sobic002G320900 Sobic002G320900 Sobic010G036000--Sobic002G320900 Sobic006G065700 Sobic006G065700 Sobic010G036000--Sobic006G065700 SobicK044200--Sobic002G425900 SobicK044200--Sobic009G154000 SobicK044200--Sobic004G330400 Sobic003G109400 Sobic003G109400 SobicK044200--Sobic003G109400 Sobic004G354800 Sobic004G354800 SobicK044200--Sobic004G354800 SobicK044200--Sobic001G255700 Sobic009G163500 Sobic009G163500 SobicK044200--Sobic009G163500 SobicK044200--Sobic002G284800 SobicK044200--Sobic010G224800 Sobic006G192400--Sobic001G017900 Sobic006G192400--Sobic002G285300 Sobic006G192400--Sobic003G267900 Sobic006G192400--Sobic004G284400 Sobic006G192400--Sobic003G397000 Sobic003G126500 Sobic003G126500 Sobic006G192400--Sobic003G126500 Sobic006G192400--Sobic006G157300 Sobic001G061500 Sobic001G061500 Sobic006G192400--Sobic001G061500 Sobic006G192400--Sobic007G156101
Octagon: transcription factors


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