Gene annotation
Transcriptome id Sobic.006G192400.2,Sobic.006G192400.1
Synonym Sb06g026520
Functional annotation U-box domain-containing protein, putative, expressed
UniProt C5YEK2 , A0A1Z5RFC8
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G23030 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os04g49500.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a010060
Brachypodium KQJ84216
Barley HORVU2Hr1G104640.9 , HORVU2Hr1G104640.8 , HORVU2Hr1G104640.3 , HORVU2Hr1G104640.2 , HORVU2Hr1G104640.5 , HORVU2Hr1G104640.4 , HORVU2Hr1G104640.7 , HORVU2Hr1G104640.6 , HORVU2Hr1G104640.15 , HORVU2Hr1G104640.14 , HORVU2Hr1G104640.17 , HORVU2Hr1G104640.16 , HORVU2Hr1G104640.11 , HORVU2Hr1G104640.10 , HORVU2Hr1G104640.13 , HORVU2Hr1G104640.12
Wheat TraesCS2D02G456500 , TraesCS2A02G456200 , TraesCS2A02G456200 , TraesCS2A02G456200 , TraesCS2A02G456200 , TraesCS2B02G478300 , TraesCS2B02G478300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017900 FAD binding protein, putative, expressed -
2 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
4 Sobic.004G284400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
5 Sobic.003G397000 expressed protein -
6 Sobic.003G126500 hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
7 Sobic.006G157300 expressed protein -
8 Sobic.001G061500 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
9 Sobic.007G156101 - -
10 Sobic.006G058300 expressed protein -
11 Sobic.002G271900 EAP30/Vps36 family domain containing protein, expressed K12188: SNF8, ESCRT-II complex subunit VPS22
12 Sobic.006G169400 expressed protein -
13 Sobic.003G400332 - -
14 Sobic.004G230900 RNA recognition motif containing protein, putative, expressed -
15 Sobic.010G155901 - -
16 Sobic.009G154000 ATOFP18/OFP18, putative, expressed -
17 Sobic.009G198400 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
18 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.004G082151 - -
20 Sobic.001G139750 - -


Gene co-expression network
sample Sobic006G192400 Sobic006G192400 Sobic001G017900 Sobic001G017900 Sobic006G192400--Sobic001G017900 Sobic002G285300 Sobic002G285300 Sobic006G192400--Sobic002G285300 Sobic003G267900 Sobic003G267900 Sobic006G192400--Sobic003G267900 Sobic004G284400 Sobic004G284400 Sobic006G192400--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic006G192400--Sobic003G397000 Sobic003G126500 Sobic003G126500 Sobic006G192400--Sobic003G126500 Sobic006G157300 Sobic006G157300 Sobic006G192400--Sobic006G157300 Sobic001G061500 Sobic001G061500 Sobic006G192400--Sobic001G061500 Sobic007G156101 Sobic007G156101 Sobic006G192400--Sobic007G156101 Sobic001G017900--Sobic006G192400 Sobic001G017900--Sobic002G285300 Sobic008G163700 Sobic008G163700 Sobic001G017900--Sobic008G163700 Sobic001G017900--Sobic007G156101 Sobic001G017900--Sobic003G267900 Sobic001G017900--Sobic006G157300 Sobic001G017900--Sobic004G284400 Sobic009G255300 Sobic009G255300 Sobic001G017900--Sobic009G255300 Sobic010G036000 Sobic010G036000 Sobic001G017900--Sobic010G036000 Sobic002G285300--Sobic004G284400 Sobic002G285300--Sobic003G397000 Sobic002G285300--Sobic001G017900 Sobic006G247500 Sobic006G247500 Sobic002G285300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic002G285300--Sobic009G154000 Sobic002G320200 Sobic002G320200 Sobic002G285300--Sobic002G320200 Sobic002G285300--Sobic010G036000 SobicK044200 SobicK044200 Sobic002G285300--SobicK044200 Sobic002G285300--Sobic006G192400 Sobic003G267900--Sobic007G156101 Sobic003G267900--Sobic002G285300 Sobic003G267900--Sobic001G017900 Sobic003G267900--Sobic006G192400 Sobic003G267900--Sobic004G284400 Sobic007G017400 Sobic007G017400 Sobic003G267900--Sobic007G017400 Sobic003G267900--Sobic010G036000 Sobic003G267900--Sobic008G163700 Sobic003G267900--Sobic003G397000 Sobic004G284400--Sobic002G285300 Sobic004G230900 Sobic004G230900 Sobic004G284400--Sobic004G230900 Sobic008G061000 Sobic008G061000 Sobic004G284400--Sobic008G061000 Sobic004G284400--Sobic009G154000 Sobic004G128600 Sobic004G128600 Sobic004G284400--Sobic004G128600 Sobic001G200500 Sobic001G200500 Sobic004G284400--Sobic001G200500 Sobic005G102100 Sobic005G102100 Sobic004G284400--Sobic005G102100 Sobic001G193400 Sobic001G193400 Sobic004G284400--Sobic001G193400 Sobic008G133100 Sobic008G133100 Sobic004G284400--Sobic008G133100 Sobic003G397000--Sobic002G320200 Sobic008G031600 Sobic008G031600 Sobic003G397000--Sobic008G031600 Sobic001G460700 Sobic001G460700 Sobic003G397000--Sobic001G460700 Sobic003G081400 Sobic003G081400 Sobic003G397000--Sobic003G081400 Sobic003G397000--Sobic002G285300 Sobic010G068300 Sobic010G068300 Sobic003G397000--Sobic010G068300 Sobic006G167200 Sobic006G167200 Sobic003G397000--Sobic006G167200 Sobic001G084500 Sobic001G084500 Sobic003G397000--Sobic001G084500 Sobic010G029200 Sobic010G029200 Sobic003G397000--Sobic010G029200 Sobic003G126500--Sobic006G192400 Sobic003G126500--Sobic001G017900 Sobic003G161200 Sobic003G161200 Sobic003G126500--Sobic003G161200 Sobic002G360701 Sobic002G360701 Sobic003G126500--Sobic002G360701 Sobic005G169800 Sobic005G169800 Sobic003G126500--Sobic005G169800 Sobic005G155001 Sobic005G155001 Sobic003G126500--Sobic005G155001 Sobic001G204200 Sobic001G204200 Sobic003G126500--Sobic001G204200 Sobic001G483200 Sobic001G483200 Sobic003G126500--Sobic001G483200 Sobic008G185000 Sobic008G185000 Sobic003G126500--Sobic008G185000 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic001G061500--Sobic006G192400 Sobic001G531900 Sobic001G531900 Sobic001G061500--Sobic001G531900 Sobic003G438200 Sobic003G438200 Sobic001G061500--Sobic003G438200 Sobic002G324100 Sobic002G324100 Sobic001G061500--Sobic002G324100 Sobic006G169400 Sobic006G169400 Sobic001G061500--Sobic006G169400 Sobic001G061500--Sobic007G156101 Sobic001G061500--Sobic004G230900 Sobic001G061500--Sobic006G157300 Sobic001G061500--Sobic003G267900 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G156101--Sobic007G017400 Sobic007G156101--Sobic002G285300 Sobic007G156101--Sobic006G192400 Sobic007G156101--Sobic008G163700 Sobic007G159800 Sobic007G159800 Sobic007G156101--Sobic007G159800 Sobic007G156101--Sobic004G284400 Sobic002G337300 Sobic002G337300 Sobic007G156101--Sobic002G337300
Octagon: transcription factors


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