Gene annotation
Transcriptome id Sobic.001G061500.1,Sobic.001G061500.2
Synonym UBC2, Sb01g005570, ATUBC2
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6QHI5 , A0A1B6QHI8
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF128
NCBI CDD KOG0419; Ubiquitin-protein ligase
KEGG Orthology K10573; UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02760 : ubiquiting-conjugating enzyme 2
RAP-DB (Rice) LOC_Os07g07240.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a016107 , Zm00025a008519 , Zm00025a016589 , Zm00025a045096
Brachypodium KQK20729 , KQK20730 , KQK12807
Barley HORVU5Hr1G104090.1
Wheat TraesCS5B02G431100 , TraesCS5B02G431100 , TraesCS5B02G431100 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS5A02G429000 , TraesCS5A02G429000 , TraesCS5A02G429000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS5D02G437100 , TraesCS5D02G437100 , TraesCS5D02G437100
Populus -


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cDNA sequences
Sobic.001G061500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G192400 U-box domain-containing protein, putative, expressed -
2 Sobic.001G531900 cyclin-like F-box, putative, expressed -
3 Sobic.003G438200 VAMP-like protein YKT62, putative, expressed K08516: synaptobrevin homolog YKT6
4 Sobic.002G324100 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
5 Sobic.006G169400 expressed protein -
6 Sobic.007G156101 - -
7 Sobic.004G230900 RNA recognition motif containing protein, putative, expressed -
8 Sobic.006G157300 expressed protein -
9 Sobic.003G267900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.004G284400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
11 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
12 Sobic.003G230300 expressed protein -
13 Sobic.009G155500 cytochrome P450, putative, expressed -
14 Sobic.006G257500 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
15 Sobic.002G370100 proline-rich protein, putative, expressed -
16 Sobic.003G400332 - -
17 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
18 Sobic.004G236500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
19 Sobic.001G139750 - -
20 Sobic.001G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G061500 Sobic001G061500 Sobic006G192400 Sobic006G192400 Sobic001G061500--Sobic006G192400 Sobic001G531900 Sobic001G531900 Sobic001G061500--Sobic001G531900 Sobic003G438200 Sobic003G438200 Sobic001G061500--Sobic003G438200 Sobic002G324100 Sobic002G324100 Sobic001G061500--Sobic002G324100 Sobic006G169400 Sobic006G169400 Sobic001G061500--Sobic006G169400 Sobic007G156101 Sobic007G156101 Sobic001G061500--Sobic007G156101 Sobic004G230900 Sobic004G230900 Sobic001G061500--Sobic004G230900 Sobic006G157300 Sobic006G157300 Sobic001G061500--Sobic006G157300 Sobic003G267900 Sobic003G267900 Sobic001G061500--Sobic003G267900 Sobic001G017900 Sobic001G017900 Sobic006G192400--Sobic001G017900 Sobic002G285300 Sobic002G285300 Sobic006G192400--Sobic002G285300 Sobic006G192400--Sobic003G267900 Sobic004G284400 Sobic004G284400 Sobic006G192400--Sobic004G284400 Sobic003G397000 Sobic003G397000 Sobic006G192400--Sobic003G397000 Sobic003G126500 Sobic003G126500 Sobic006G192400--Sobic003G126500 Sobic006G192400--Sobic006G157300 Sobic006G192400--Sobic001G061500 Sobic006G192400--Sobic007G156101 Sobic010G045300 Sobic010G045300 Sobic001G531900--Sobic010G045300 Sobic006G133650 Sobic006G133650 Sobic001G531900--Sobic006G133650 Sobic005G022600 Sobic005G022600 Sobic001G531900--Sobic005G022600 Sobic002G188100 Sobic002G188100 Sobic001G531900--Sobic002G188100 Sobic009G039400 Sobic009G039400 Sobic001G531900--Sobic009G039400 Sobic003G081400 Sobic003G081400 Sobic001G531900--Sobic003G081400 Sobic006G167200 Sobic006G167200 Sobic001G531900--Sobic006G167200 Sobic004G069600 Sobic004G069600 Sobic001G531900--Sobic004G069600 Sobic010G029200 Sobic010G029200 Sobic001G531900--Sobic010G029200 Sobic004G300500 Sobic004G300500 Sobic003G438200--Sobic004G300500 Sobic003G230300 Sobic003G230300 Sobic003G438200--Sobic003G230300 Sobic001G429100 Sobic001G429100 Sobic003G438200--Sobic001G429100 Sobic004G320300 Sobic004G320300 Sobic003G438200--Sobic004G320300 Sobic003G438200--Sobic001G531900 Sobic003G438200--Sobic004G230900 Sobic003G438200--Sobic001G061500 Sobic002G241000 Sobic002G241000 Sobic003G438200--Sobic002G241000 Sobic002G056300 Sobic002G056300 Sobic003G438200--Sobic002G056300 Sobic002G324100--Sobic001G061500 Sobic002G324100--Sobic006G192400 Sobic003G346200 Sobic003G346200 Sobic002G324100--Sobic003G346200 Sobic002G324100--Sobic004G230900 Sobic001G198900 Sobic001G198900 Sobic002G324100--Sobic001G198900 Sobic001G004000 Sobic001G004000 Sobic002G324100--Sobic001G004000 Sobic002G324100--Sobic001G531900 Sobic001G396300 Sobic001G396300 Sobic002G324100--Sobic001G396300 Sobic002G324100--Sobic003G267900 Sobic006G169400--Sobic003G397000 Sobic004G310700 Sobic004G310700 Sobic006G169400--Sobic004G310700 Sobic002G320200 Sobic002G320200 Sobic006G169400--Sobic002G320200 Sobic006G169400--Sobic003G081400 Sobic008G031600 Sobic008G031600 Sobic006G169400--Sobic008G031600 Sobic001G402701 Sobic001G402701 Sobic006G169400--Sobic001G402701 Sobic001G460700 Sobic001G460700 Sobic006G169400--Sobic001G460700 Sobic006G169400--Sobic001G531900 Sobic003G201400 Sobic003G201400 Sobic006G169400--Sobic003G201400 Sobic007G156101--Sobic003G267900 Sobic007G156101--Sobic001G017900 Sobic007G017400 Sobic007G017400 Sobic007G156101--Sobic007G017400 Sobic007G156101--Sobic002G285300 Sobic007G156101--Sobic006G192400 Sobic008G163700 Sobic008G163700 Sobic007G156101--Sobic008G163700 Sobic007G159800 Sobic007G159800 Sobic007G156101--Sobic007G159800 Sobic007G156101--Sobic004G284400 Sobic002G337300 Sobic002G337300 Sobic007G156101--Sobic002G337300 Sobic003G350100 Sobic003G350100 Sobic004G230900--Sobic003G350100 Sobic002G403400 Sobic002G403400 Sobic004G230900--Sobic002G403400 Sobic003G067300 Sobic003G067300 Sobic004G230900--Sobic003G067300 Sobic001G193400 Sobic001G193400 Sobic004G230900--Sobic001G193400 Sobic003G067500 Sobic003G067500 Sobic004G230900--Sobic003G067500 Sobic008G133100 Sobic008G133100 Sobic004G230900--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic004G230900--Sobic004G265400 Sobic001G200500 Sobic001G200500 Sobic004G230900--Sobic001G200500 Sobic004G230900--Sobic002G056300 Sobic001G190000 Sobic001G190000 Sobic006G157300--Sobic001G190000 SobicK044200 SobicK044200 Sobic006G157300--SobicK044200 Sobic002G206200 Sobic002G206200 Sobic006G157300--Sobic002G206200 Sobic009G154000 Sobic009G154000 Sobic006G157300--Sobic009G154000 Sobic010G224800 Sobic010G224800 Sobic006G157300--Sobic010G224800 Sobic003G109400 Sobic003G109400 Sobic006G157300--Sobic003G109400 Sobic006G172651 Sobic006G172651 Sobic006G157300--Sobic006G172651 Sobic001G261440 Sobic001G261440 Sobic006G157300--Sobic001G261440 Sobic010G114400 Sobic010G114400 Sobic006G157300--Sobic010G114400 Sobic003G267900--Sobic007G156101 Sobic003G267900--Sobic002G285300 Sobic003G267900--Sobic001G017900 Sobic003G267900--Sobic006G192400 Sobic003G267900--Sobic004G284400 Sobic003G267900--Sobic007G017400 Sobic010G036000 Sobic010G036000 Sobic003G267900--Sobic010G036000 Sobic003G267900--Sobic008G163700 Sobic003G267900--Sobic003G397000
Octagon: transcription factors


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