Gene annotation
Transcriptome id Sobic.003G438200.3,Sobic.003G438200.2
Synonym Sb03g046850, YKT61, ATYKT61, ATGP1
Functional annotation VAMP-like protein YKT62, putative, expressed
UniProt C5XJ85
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF106
NCBI CDD KOG0861; SNARE protein YKT6, synaptobrevin/VAMP syperfamily
KEGG Orthology K08516; synaptobrevin homolog YKT6
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G58060 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os01g73300.1 : VAMP-like protein YKT62, putative, expressed
MaizeGDB (Corn) Zm00025a039565 , Zm00025a039067 , Zm00025a026718
Brachypodium PNT73251 , PNT73250
Barley HORVU3Hr1G083350.12 , HORVU3Hr1G083350.10 , HORVU3Hr1G083350.11 , HORVU3Hr1G083350.9
Wheat TraesCS3D02G370600 , TraesCS3A02G377500 , TraesCS3A02G377500
Populus PNS93863


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cDNA sequences
Sobic.003G438200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G300500 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.003G230300 expressed protein -
3 Sobic.001G429100 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
4 Sobic.004G320300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.001G531900 cyclin-like F-box, putative, expressed -
6 Sobic.004G230900 RNA recognition motif containing protein, putative, expressed -
7 Sobic.001G061500 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
8 Sobic.002G241000 expressed protein -
9 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
10 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
11 Sobic.006G139600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@plant protein of unknown function domain containing protein, expressed -
12 Sobic.002G276700 protein of unknown function containing protein, expressed -
13 Sobic.003G346200 myosin heavy chain-related, putative, expressed -
14 Sobic.005G022600 PME/invertase inhibitor, putative, expressed -
15 Sobic.006G169400 expressed protein -
16 Sobic.001G362800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K06940: uncharacterized protein
17 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.002G305600 cytokinin-O-glucosyltransferase 2, putative, expressed -
19 Sobic.006G172651 - -
20 Sobic.004G034000 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed -


Gene co-expression network
sample Sobic003G438200 Sobic003G438200 Sobic004G300500 Sobic004G300500 Sobic003G438200--Sobic004G300500 Sobic003G230300 Sobic003G230300 Sobic003G438200--Sobic003G230300 Sobic001G429100 Sobic001G429100 Sobic003G438200--Sobic001G429100 Sobic004G320300 Sobic004G320300 Sobic003G438200--Sobic004G320300 Sobic001G531900 Sobic001G531900 Sobic003G438200--Sobic001G531900 Sobic004G230900 Sobic004G230900 Sobic003G438200--Sobic004G230900 Sobic001G061500 Sobic001G061500 Sobic003G438200--Sobic001G061500 Sobic002G241000 Sobic002G241000 Sobic003G438200--Sobic002G241000 Sobic002G056300 Sobic002G056300 Sobic003G438200--Sobic002G056300 Sobic004G300500--Sobic003G230300 Sobic001G362800 Sobic001G362800 Sobic004G300500--Sobic001G362800 Sobic006G053000 Sobic006G053000 Sobic004G300500--Sobic006G053000 Sobic010G189800 Sobic010G189800 Sobic004G300500--Sobic010G189800 Sobic001G295900 Sobic001G295900 Sobic004G300500--Sobic001G295900 Sobic004G236500 Sobic004G236500 Sobic004G300500--Sobic004G236500 Sobic004G300500--Sobic001G429100 Sobic010G073300 Sobic010G073300 Sobic004G300500--Sobic010G073300 Sobic001G180300 Sobic001G180300 Sobic004G300500--Sobic001G180300 Sobic001G407000 Sobic001G407000 Sobic003G230300--Sobic001G407000 Sobic003G230300--Sobic006G053000 Sobic008G020300 Sobic008G020300 Sobic003G230300--Sobic008G020300 Sobic003G105300 Sobic003G105300 Sobic003G230300--Sobic003G105300 Sobic006G257500 Sobic006G257500 Sobic003G230300--Sobic006G257500 Sobic001G541900 Sobic001G541900 Sobic003G230300--Sobic001G541900 Sobic001G255700 Sobic001G255700 Sobic003G230300--Sobic001G255700 Sobic007G116600 Sobic007G116600 Sobic003G230300--Sobic007G116600 Sobic006G058300 Sobic006G058300 Sobic003G230300--Sobic006G058300 Sobic002G276700 Sobic002G276700 Sobic001G429100--Sobic002G276700 Sobic004G192700 Sobic004G192700 Sobic001G429100--Sobic004G192700 Sobic001G429100--Sobic002G056300 Sobic001G441800 Sobic001G441800 Sobic001G429100--Sobic001G441800 Sobic003G350100 Sobic003G350100 Sobic001G429100--Sobic003G350100 Sobic001G200500 Sobic001G200500 Sobic001G429100--Sobic001G200500 Sobic004G227000 Sobic004G227000 Sobic001G429100--Sobic004G227000 Sobic008G133100 Sobic008G133100 Sobic001G429100--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic001G429100--Sobic004G265400 Sobic004G320300--Sobic001G200500 Sobic009G031100 Sobic009G031100 Sobic004G320300--Sobic009G031100 Sobic002G156300 Sobic002G156300 Sobic004G320300--Sobic002G156300 Sobic003G109400 Sobic003G109400 Sobic004G320300--Sobic003G109400 Sobic007G001300 Sobic007G001300 Sobic004G320300--Sobic007G001300 Sobic010G224800 Sobic010G224800 Sobic004G320300--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic004G320300--Sobic010G114400 Sobic003G201400 Sobic003G201400 Sobic004G320300--Sobic003G201400 Sobic002G206200 Sobic002G206200 Sobic004G320300--Sobic002G206200 Sobic010G045300 Sobic010G045300 Sobic001G531900--Sobic010G045300 Sobic006G133650 Sobic006G133650 Sobic001G531900--Sobic006G133650 Sobic005G022600 Sobic005G022600 Sobic001G531900--Sobic005G022600 Sobic002G188100 Sobic002G188100 Sobic001G531900--Sobic002G188100 Sobic009G039400 Sobic009G039400 Sobic001G531900--Sobic009G039400 Sobic003G081400 Sobic003G081400 Sobic001G531900--Sobic003G081400 Sobic006G167200 Sobic006G167200 Sobic001G531900--Sobic006G167200 Sobic004G069600 Sobic004G069600 Sobic001G531900--Sobic004G069600 Sobic010G029200 Sobic010G029200 Sobic001G531900--Sobic010G029200 Sobic004G230900--Sobic003G350100 Sobic002G403400 Sobic002G403400 Sobic004G230900--Sobic002G403400 Sobic003G067300 Sobic003G067300 Sobic004G230900--Sobic003G067300 Sobic001G193400 Sobic001G193400 Sobic004G230900--Sobic001G193400 Sobic003G067500 Sobic003G067500 Sobic004G230900--Sobic003G067500 Sobic004G230900--Sobic008G133100 Sobic004G230900--Sobic004G265400 Sobic004G230900--Sobic001G200500 Sobic004G230900--Sobic002G056300 Sobic006G192400 Sobic006G192400 Sobic001G061500--Sobic006G192400 Sobic001G061500--Sobic001G531900 Sobic001G061500--Sobic003G438200 Sobic002G324100 Sobic002G324100 Sobic001G061500--Sobic002G324100 Sobic006G169400 Sobic006G169400 Sobic001G061500--Sobic006G169400 Sobic007G156101 Sobic007G156101 Sobic001G061500--Sobic007G156101 Sobic001G061500--Sobic004G230900 Sobic006G157300 Sobic006G157300 Sobic001G061500--Sobic006G157300 Sobic003G267900 Sobic003G267900 Sobic001G061500--Sobic003G267900 Sobic001G227100 Sobic001G227100 Sobic002G241000--Sobic001G227100 Sobic004G063750 Sobic004G063750 Sobic002G241000--Sobic004G063750 Sobic006G082700 Sobic006G082700 Sobic002G241000--Sobic006G082700 Sobic007G135900 Sobic007G135900 Sobic002G241000--Sobic007G135900 Sobic002G059600 Sobic002G059600 Sobic002G241000--Sobic002G059600 Sobic002G241000--Sobic003G438200 Sobic001G298100 Sobic001G298100 Sobic002G241000--Sobic001G298100 Sobic002G295000 Sobic002G295000 Sobic002G241000--Sobic002G295000 Sobic010G212000 Sobic010G212000 Sobic002G241000--Sobic010G212000 Sobic002G059200 Sobic002G059200 Sobic002G056300--Sobic002G059200 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic001G416800 Sobic001G416800 Sobic002G056300--Sobic001G416800 Sobic002G056300--Sobic008G133100 Sobic007G149600 Sobic007G149600 Sobic002G056300--Sobic007G149600 Sobic002G056300--Sobic001G200500
Octagon: transcription factors


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