Gene annotation
Transcriptome id Sobic.004G300500.1,Sobic.004G300500.2,Sobic.004G300500.3
Synonym Sb04g033390, SbTri04;SbTri04
Functional annotation Trihelix Family (PubMedID : 24864043)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RPR6 , C5XS35
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF21
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76890 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os02g43300.1 : expressed protein
MaizeGDB (Corn) Zm00025a017424 , Zm00025a056623 , Zm00025a010385 , Zm00025a020935 , Zm00025a032162 , Zm00025a035087 , Zm00025a000196 , Zm00025a018641
Brachypodium KQJ83849 , KQJ83848 , KQJ97389 , KQJ97388 , PNT67683 , KQJ83854 , KQJ83850 , KQJ83851 , KQJ83852 , KQJ83853 , KQJ97390 , PNT69145 , KQK24020 , KQJ92790
Barley HORVU6Hr1G061300.10 , HORVU6Hr1G061300.11 , HORVU2Hr1G092650.6 , HORVU2Hr1G092650.7 , HORVU2Hr1G092650.4 , HORVU2Hr1G092650.5 , HORVU2Hr1G092650.2 , HORVU2Hr1G092650.3 , HORVU2Hr1G092650.1 , HORVU6Hr1G061300.8 , HORVU6Hr1G061300.9 , HORVU6Hr1G061300.6 , HORVU6Hr1G061300.7 , HORVU6Hr1G061300.4 , HORVU6Hr1G061300.5 , HORVU6Hr1G061300.2 , HORVU6Hr1G061300.3 , HORVU6Hr1G061300.1 , HORVU1Hr1G046940.8 , HORVU1Hr1G046940.9 , HORVU1Hr1G046940.4 , HORVU1Hr1G046940.5 , HORVU1Hr1G046940.6 , HORVU1Hr1G046940.7 , HORVU1Hr1G046940.1 , HORVU1Hr1G046940.2 , HORVU1Hr1G046940.3 , HORVU0Hr1G014900.2 , HORVU0Hr1G014900.3 , HORVU0Hr1G014900.1 , HORVU0Hr1G014900.4 , HORVU4Hr1G089120.2 , HORVU4Hr1G089120.3 , HORVU4Hr1G089120.1 , HORVU4Hr1G089120.6 , HORVU4Hr1G089120.4
Wheat TraesCS1D02G162400 , TraesCS1D02G162400 , TraesCS6D02G016300 , TraesCS4B02G396900 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS2A02G389200 , TraesCS1A02G176700 , TraesCS1A02G176700 , TraesCS1B02G203300 , TraesCS1B02G203300 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6D02G222500 , TraesCS6A02G013200 , TraesCS6A02G013200 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G284400 , TraesCS6B02G020100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2D02G387100 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS2B02G407400 , TraesCS6A02G240200 , TraesCS6A02G240200 , TraesCS5A02G558200 , TraesCSU02G029700
Populus -


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cDNA sequences
Sobic.004G300500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G230300 expressed protein -
2 Sobic.001G362800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K06940: uncharacterized protein
3 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
4 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
5 Sobic.001G295900 AGC_PVPK_like_kin82y.17 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.004G236500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
7 Sobic.001G429100 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
8 Sobic.010G073300 expressed protein -
9 Sobic.001G180300 expressed protein -
10 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
11 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
12 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
13 Sobic.006G187600 DUF623 domain containing protein, expressed -
14 Sobic.006G247500 terpene synthase, putative, expressed -
15 Sobic.006G139600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@plant protein of unknown function domain containing protein, expressed -
16 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
17 Sobic.002G425900 expressed protein -
18 Sobic.003G105300 - -
19 Sobic.010G224800 patellin-5, putative, expressed -
20 Sobic.002G284800 expressed protein -


Gene co-expression network
sample Sobic004G300500 Sobic004G300500 Sobic003G230300 Sobic003G230300 Sobic004G300500--Sobic003G230300 Sobic001G362800 Sobic001G362800 Sobic004G300500--Sobic001G362800 Sobic006G053000 Sobic006G053000 Sobic004G300500--Sobic006G053000 Sobic010G189800 Sobic010G189800 Sobic004G300500--Sobic010G189800 Sobic001G295900 Sobic001G295900 Sobic004G300500--Sobic001G295900 Sobic004G236500 Sobic004G236500 Sobic004G300500--Sobic004G236500 Sobic001G429100 Sobic001G429100 Sobic004G300500--Sobic001G429100 Sobic010G073300 Sobic010G073300 Sobic004G300500--Sobic010G073300 Sobic001G180300 Sobic001G180300 Sobic004G300500--Sobic001G180300 Sobic001G407000 Sobic001G407000 Sobic003G230300--Sobic001G407000 Sobic003G230300--Sobic006G053000 Sobic008G020300 Sobic008G020300 Sobic003G230300--Sobic008G020300 Sobic003G105300 Sobic003G105300 Sobic003G230300--Sobic003G105300 Sobic006G257500 Sobic006G257500 Sobic003G230300--Sobic006G257500 Sobic001G541900 Sobic001G541900 Sobic003G230300--Sobic001G541900 Sobic001G255700 Sobic001G255700 Sobic003G230300--Sobic001G255700 Sobic007G116600 Sobic007G116600 Sobic003G230300--Sobic007G116600 Sobic006G058300 Sobic006G058300 Sobic003G230300--Sobic006G058300 Sobic001G362800--Sobic006G053000 Sobic001G362800--Sobic003G230300 Sobic001G362800--Sobic010G189800 Sobic001G362800--Sobic004G300500 Sobic004G192700 Sobic004G192700 Sobic001G362800--Sobic004G192700 Sobic001G362800--Sobic010G073300 Sobic002G263900 Sobic002G263900 Sobic001G362800--Sobic002G263900 SobicK044200 SobicK044200 Sobic001G362800--SobicK044200 Sobic001G362800--Sobic001G429100 Sobic006G229600 Sobic006G229600 Sobic006G053000--Sobic006G229600 Sobic002G271900 Sobic002G271900 Sobic006G053000--Sobic002G271900 Sobic006G053000--Sobic003G230300 Sobic010G155901 Sobic010G155901 Sobic006G053000--Sobic010G155901 Sobic006G053000--Sobic006G058300 Sobic003G400332 Sobic003G400332 Sobic006G053000--Sobic003G400332 Sobic006G069050 Sobic006G069050 Sobic006G053000--Sobic006G069050 Sobic003G149900 Sobic003G149900 Sobic006G053000--Sobic003G149900 Sobic006G110600 Sobic006G110600 Sobic006G053000--Sobic006G110600 Sobic007G081300 Sobic007G081300 Sobic010G189800--Sobic007G081300 Sobic010G189800--Sobic004G192700 Sobic003G092200 Sobic003G092200 Sobic010G189800--Sobic003G092200 Sobic006G187600 Sobic006G187600 Sobic010G189800--Sobic006G187600 Sobic010G189800--Sobic010G073300 Sobic007G149600 Sobic007G149600 Sobic010G189800--Sobic007G149600 Sobic004G227000 Sobic004G227000 Sobic010G189800--Sobic004G227000 Sobic003G301200 Sobic003G301200 Sobic010G189800--Sobic003G301200 Sobic001G441800 Sobic001G441800 Sobic010G189800--Sobic001G441800 Sobic006G005000 Sobic006G005000 Sobic001G295900--Sobic006G005000 Sobic001G295900--Sobic007G081300 Sobic001G295900--Sobic004G300500 Sobic001G295900--Sobic001G180300 Sobic001G295900--Sobic003G230300 Sobic001G295900--Sobic004G192700 Sobic004G344301 Sobic004G344301 Sobic001G295900--Sobic004G344301 Sobic010G074980 Sobic010G074980 Sobic001G295900--Sobic010G074980 Sobic001G295900--Sobic002G263900 Sobic004G236500--Sobic006G257500 Sobic004G236500--Sobic008G020300 Sobic003G008850 Sobic003G008850 Sobic004G236500--Sobic003G008850 Sobic004G236500--Sobic010G155901 Sobic001G145300 Sobic001G145300 Sobic004G236500--Sobic001G145300 Sobic010G132300 Sobic010G132300 Sobic004G236500--Sobic010G132300 Sobic006G094400 Sobic006G094400 Sobic004G236500--Sobic006G094400 Sobic004G236500--Sobic001G407000 Sobic002G284701 Sobic002G284701 Sobic004G236500--Sobic002G284701 Sobic002G276700 Sobic002G276700 Sobic001G429100--Sobic002G276700 Sobic001G429100--Sobic004G192700 Sobic002G056300 Sobic002G056300 Sobic001G429100--Sobic002G056300 Sobic001G429100--Sobic001G441800 Sobic003G350100 Sobic003G350100 Sobic001G429100--Sobic003G350100 Sobic001G200500 Sobic001G200500 Sobic001G429100--Sobic001G200500 Sobic001G429100--Sobic004G227000 Sobic008G133100 Sobic008G133100 Sobic001G429100--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic001G429100--Sobic004G265400 Sobic002G284901 Sobic002G284901 Sobic010G073300--Sobic002G284901 Sobic003G120400 Sobic003G120400 Sobic010G073300--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic010G073300--Sobic001G525000 Sobic002G320900 Sobic002G320900 Sobic010G073300--Sobic002G320900 Sobic002G430200 Sobic002G430200 Sobic010G073300--Sobic002G430200 Sobic001G130900 Sobic001G130900 Sobic010G073300--Sobic001G130900 Sobic003G200501 Sobic003G200501 Sobic010G073300--Sobic003G200501 Sobic002G387100 Sobic002G387100 Sobic010G073300--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic010G073300--Sobic002G210200 Sobic001G180300--Sobic006G187600 Sobic001G180300--Sobic004G227000 Sobic006G278400 Sobic006G278400 Sobic001G180300--Sobic006G278400 Sobic010G014200 Sobic010G014200 Sobic001G180300--Sobic010G014200 Sobic001G180300--Sobic003G092200 Sobic002G425900 Sobic002G425900 Sobic001G180300--Sobic002G425900 Sobic008G163600 Sobic008G163600 Sobic001G180300--Sobic008G163600 Sobic004G329100 Sobic004G329100 Sobic001G180300--Sobic004G329100 Sobic010G178900 Sobic010G178900 Sobic001G180300--Sobic010G178900
Octagon: transcription factors


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