Gene annotation
Transcriptome id Sobic.001G429100.1
Synonym Sb01g040320, NCBP
Functional annotation eukaryotic translation initiation factor, putative, expressed
UniProt C5WQ71
Pfam PF01652
Panther DB PTHR11960 PTHR11960:SF18
NCBI CDD KOG1669; Predicted mRNA cap-binding protein related to eIF-4E
KEGG Orthology K03259; translation initiation factor 4E
Gene Ontology GO:0006413; translational initiation GO:0005737cytoplasm GO:0003743translation initiation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G18110 : novel cap-binding protein
RAP-DB (Rice) LOC_Os03g15590.1 : eukaryotic translation initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a001696
Brachypodium KQK22466
Barley HORVU4Hr1G061500.2 , HORVU4Hr1G061500.3 , HORVU4Hr1G061500.1 , HORVU4Hr1G061500.6 , HORVU4Hr1G061500.7 , HORVU4Hr1G061500.4 , HORVU4Hr1G061500.5 , HORVU4Hr1G061500.8
Wheat TraesCS4A02G087900 , TraesCS4D02G216800 , TraesCS4B02G216300
Populus -


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cDNA sequences
Sobic.001G429100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G276700 protein of unknown function containing protein, expressed -
2 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
3 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
4 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
5 Sobic.003G350100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.001G200500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
7 Sobic.004G227000 expressed protein -
8 Sobic.008G133100 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
9 Sobic.004G265400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
10 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
11 Sobic.002G425900 expressed protein -
12 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
13 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
14 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
15 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.007G149600 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
17 Sobic.008G028500 expressed protein -
18 Sobic.002G284800 expressed protein -
19 Sobic.010G224800 patellin-5, putative, expressed -
20 Sobic.002G387100 X8 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G429100 Sobic001G429100 Sobic002G276700 Sobic002G276700 Sobic001G429100--Sobic002G276700 Sobic004G192700 Sobic004G192700 Sobic001G429100--Sobic004G192700 Sobic002G056300 Sobic002G056300 Sobic001G429100--Sobic002G056300 Sobic001G441800 Sobic001G441800 Sobic001G429100--Sobic001G441800 Sobic003G350100 Sobic003G350100 Sobic001G429100--Sobic003G350100 Sobic001G200500 Sobic001G200500 Sobic001G429100--Sobic001G200500 Sobic004G227000 Sobic004G227000 Sobic001G429100--Sobic004G227000 Sobic008G133100 Sobic008G133100 Sobic001G429100--Sobic008G133100 Sobic004G265400 Sobic004G265400 Sobic001G429100--Sobic004G265400 Sobic002G276700--Sobic001G441800 Sobic002G276700--Sobic003G350100 Sobic002G276700--Sobic008G133100 Sobic003G067300 Sobic003G067300 Sobic002G276700--Sobic003G067300 Sobic002G387100 Sobic002G387100 Sobic002G276700--Sobic002G387100 Sobic002G284800 Sobic002G284800 Sobic002G276700--Sobic002G284800 Sobic002G430200 Sobic002G430200 Sobic002G276700--Sobic002G430200 Sobic001G193400 Sobic001G193400 Sobic002G276700--Sobic001G193400 Sobic007G122300 Sobic007G122300 Sobic002G276700--Sobic007G122300 Sobic004G192700--Sobic004G265400 Sobic003G067500 Sobic003G067500 Sobic004G192700--Sobic003G067500 Sobic007G149600 Sobic007G149600 Sobic004G192700--Sobic007G149600 Sobic003G200501 Sobic003G200501 Sobic004G192700--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic004G192700--Sobic002G210200 Sobic007G221800 Sobic007G221800 Sobic004G192700--Sobic007G221800 Sobic010G073300 Sobic010G073300 Sobic004G192700--Sobic010G073300 Sobic004G192700--Sobic003G067300 Sobic002G284901 Sobic002G284901 Sobic004G192700--Sobic002G284901 Sobic002G059200 Sobic002G059200 Sobic002G056300--Sobic002G059200 Sobic002G403400 Sobic002G403400 Sobic002G056300--Sobic002G403400 Sobic002G056300--Sobic003G350100 Sobic002G056300--Sobic003G067300 Sobic002G056300--Sobic004G265400 Sobic001G416800 Sobic001G416800 Sobic002G056300--Sobic001G416800 Sobic002G056300--Sobic008G133100 Sobic002G056300--Sobic007G149600 Sobic002G056300--Sobic001G200500 Sobic003G368150 Sobic003G368150 Sobic001G441800--Sobic003G368150 Sobic001G441800--Sobic002G387100 Sobic001G441800--Sobic007G122300 Sobic001G441800--Sobic002G284800 Sobic001G441800--Sobic002G430200 Sobic001G441800--Sobic008G133100 Sobic004G239000 Sobic004G239000 Sobic001G441800--Sobic004G239000 Sobic003G099500 Sobic003G099500 Sobic001G441800--Sobic003G099500 Sobic001G255700 Sobic001G255700 Sobic001G441800--Sobic001G255700 Sobic003G350100--Sobic003G067300 Sobic003G350100--Sobic004G265400 Sobic003G350100--Sobic007G149600 Sobic003G350100--Sobic001G193400 Sobic003G350100--Sobic003G067500 Sobic003G350100--Sobic003G200501 Sobic003G350100--Sobic002G210200 Sobic003G350100--Sobic002G387100 Sobic003G350100--Sobic008G133100 Sobic001G200500--Sobic008G133100 Sobic010G224800 Sobic010G224800 Sobic001G200500--Sobic010G224800 Sobic007G001300 Sobic007G001300 Sobic001G200500--Sobic007G001300 Sobic009G031100 Sobic009G031100 Sobic001G200500--Sobic009G031100 Sobic001G200500--Sobic001G255700 Sobic001G200500--Sobic002G284800 Sobic003G109400 Sobic003G109400 Sobic001G200500--Sobic003G109400 Sobic002G156300 Sobic002G156300 Sobic001G200500--Sobic002G156300 Sobic001G200500--Sobic003G368150 Sobic006G278400 Sobic006G278400 Sobic004G227000--Sobic006G278400 Sobic001G180300 Sobic001G180300 Sobic004G227000--Sobic001G180300 Sobic002G425900 Sobic002G425900 Sobic004G227000--Sobic002G425900 Sobic006G187600 Sobic006G187600 Sobic004G227000--Sobic006G187600 Sobic004G128600 Sobic004G128600 Sobic004G227000--Sobic004G128600 Sobic004G227000--Sobic010G224800 Sobic004G227000--Sobic002G059200 Sobic004G329100 Sobic004G329100 Sobic004G227000--Sobic004G329100 Sobic010G114400 Sobic010G114400 Sobic004G227000--Sobic010G114400 Sobic008G133100--Sobic002G284800 Sobic008G133100--Sobic001G255700 Sobic008G133100--Sobic003G368150 Sobic008G133100--Sobic001G441800 Sobic008G133100--Sobic004G239000 Sobic008G131800 Sobic008G131800 Sobic008G133100--Sobic008G131800 Sobic003G105300 Sobic003G105300 Sobic008G133100--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic008G133100--Sobic004G197300 Sobic008G133100--Sobic001G200500 Sobic004G265400--Sobic007G149600 Sobic004G265400--Sobic007G221800 Sobic004G265400--Sobic003G350100 Sobic004G265400--Sobic003G067300 Sobic004G265400--Sobic003G067500 Sobic004G265400--Sobic003G200501 Sobic004G265400--Sobic002G210200 Sobic004G265400--Sobic001G193400 Sobic004G265400--Sobic002G059200
Octagon: transcription factors


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