Gene annotation
Transcriptome id Sobic.004G034000.2,Sobic.004G034000.1
Synonym Sb04g002930
Functional annotation 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed
UniProt A0A194YMK8
Pfam PF16561
Panther DB PTHR10343 PTHR10343:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39790 : 5\'-AMP-activated protein kinase-related
RAP-DB (Rice) LOC_Os02g04330.1,LOC_Os02g04330.2 : 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed
MaizeGDB (Corn) Zm00025a018908
Brachypodium KQJ93208 , KQJ93203 , KQJ93204 , KQJ93205 , KQJ93206 , KQJ93207
Barley HORVU6Hr1G018500.12 , HORVU6Hr1G018500.13 , HORVU6Hr1G018500.10 , HORVU6Hr1G018500.11 , HORVU6Hr1G018500.14 , HORVU6Hr1G018500.1 , HORVU6Hr1G018500.2 , HORVU6Hr1G018500.3 , HORVU6Hr1G018500.4 , HORVU6Hr1G018500.5 , HORVU6Hr1G018500.6 , HORVU6Hr1G018500.7 , HORVU6Hr1G018500.9
Wheat TraesCS6D02G090900 , TraesCS6B02G130700 , TraesCS6A02G102300
Populus -


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cDNA sequences
Sobic.004G034000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073300 expressed protein -
2 Sobic.003G230300 expressed protein -
3 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
4 Sobic.003G179100 protein binding protein, putative, expressed K12821: PRPF40, pre-mRNA-processing factor 40
5 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.003G120400 expressed protein -
7 Sobic.004G192700 dynein light chain type 1 family protein, putative, expressed K10418: dynein light chain LC8-type
8 Sobic.002G284901 - -
9 Sobic.010G201000 - -
10 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
11 Sobic.010G074980 - -
12 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
13 Sobic.003G200501 - K11252: histone H2B
14 Sobic.001G525000 polygalacturonase, putative, expressed -
15 Sobic.006G069050 - -
16 Sobic.002G387100 X8 domain containing protein, expressed -
17 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
18 Sobic.007G093400 - -
19 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.003G367401 - -


Gene co-expression network
sample Sobic004G034000 Sobic004G034000 Sobic010G073300 Sobic010G073300 Sobic004G034000--Sobic010G073300 Sobic003G230300 Sobic003G230300 Sobic004G034000--Sobic003G230300 Sobic006G053000 Sobic006G053000 Sobic004G034000--Sobic006G053000 Sobic003G179100 Sobic003G179100 Sobic004G034000--Sobic003G179100 Sobic003G067500 Sobic003G067500 Sobic004G034000--Sobic003G067500 Sobic003G120400 Sobic003G120400 Sobic004G034000--Sobic003G120400 Sobic004G192700 Sobic004G192700 Sobic004G034000--Sobic004G192700 Sobic002G284901 Sobic002G284901 Sobic004G034000--Sobic002G284901 Sobic010G201000 Sobic010G201000 Sobic004G034000--Sobic010G201000 Sobic010G073300--Sobic002G284901 Sobic010G073300--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic010G073300--Sobic001G525000 Sobic002G320900 Sobic002G320900 Sobic010G073300--Sobic002G320900 Sobic002G430200 Sobic002G430200 Sobic010G073300--Sobic002G430200 Sobic001G130900 Sobic001G130900 Sobic010G073300--Sobic001G130900 Sobic003G200501 Sobic003G200501 Sobic010G073300--Sobic003G200501 Sobic002G387100 Sobic002G387100 Sobic010G073300--Sobic002G387100 Sobic002G210200 Sobic002G210200 Sobic010G073300--Sobic002G210200 Sobic001G407000 Sobic001G407000 Sobic003G230300--Sobic001G407000 Sobic003G230300--Sobic006G053000 Sobic008G020300 Sobic008G020300 Sobic003G230300--Sobic008G020300 Sobic003G105300 Sobic003G105300 Sobic003G230300--Sobic003G105300 Sobic006G257500 Sobic006G257500 Sobic003G230300--Sobic006G257500 Sobic001G541900 Sobic001G541900 Sobic003G230300--Sobic001G541900 Sobic001G255700 Sobic001G255700 Sobic003G230300--Sobic001G255700 Sobic007G116600 Sobic007G116600 Sobic003G230300--Sobic007G116600 Sobic006G058300 Sobic006G058300 Sobic003G230300--Sobic006G058300 Sobic006G229600 Sobic006G229600 Sobic006G053000--Sobic006G229600 Sobic002G271900 Sobic002G271900 Sobic006G053000--Sobic002G271900 Sobic006G053000--Sobic003G230300 Sobic010G155901 Sobic010G155901 Sobic006G053000--Sobic010G155901 Sobic006G053000--Sobic006G058300 Sobic003G400332 Sobic003G400332 Sobic006G053000--Sobic003G400332 Sobic006G069050 Sobic006G069050 Sobic006G053000--Sobic006G069050 Sobic003G149900 Sobic003G149900 Sobic006G053000--Sobic003G149900 Sobic006G110600 Sobic006G110600 Sobic006G053000--Sobic006G110600 Sobic003G179100--Sobic010G073300 Sobic003G179100--Sobic002G284901 Sobic003G179100--Sobic002G320900 Sobic003G179100--Sobic003G120400 Sobic003G179100--Sobic001G525000 Sobic006G065700 Sobic006G065700 Sobic003G179100--Sobic006G065700 Sobic003G179100--Sobic002G430200 Sobic003G179100--Sobic002G387100 Sobic001G519300 Sobic001G519300 Sobic003G179100--Sobic001G519300 Sobic003G067500--Sobic003G200501 Sobic003G067500--Sobic002G210200 Sobic003G067300 Sobic003G067300 Sobic003G067500--Sobic003G067300 Sobic003G067500--Sobic002G284901 Sobic007G221800 Sobic007G221800 Sobic003G067500--Sobic007G221800 Sobic003G067500--Sobic002G320900 Sobic004G265400 Sobic004G265400 Sobic003G067500--Sobic004G265400 Sobic003G067500--Sobic001G525000 Sobic003G067500--Sobic003G120400 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic007G093400 Sobic007G093400 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G120400--Sobic003G367401 Sobic004G192700--Sobic004G265400 Sobic004G192700--Sobic003G067500 Sobic007G149600 Sobic007G149600 Sobic004G192700--Sobic007G149600 Sobic004G192700--Sobic003G200501 Sobic004G192700--Sobic002G210200 Sobic004G192700--Sobic007G221800 Sobic004G192700--Sobic010G073300 Sobic004G192700--Sobic003G067300 Sobic004G192700--Sobic002G284901 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic002G284901--Sobic007G093400 Sobic002G284901--Sobic006G065700 Sobic002G284901--Sobic003G067500 Sobic002G284901--Sobic002G430200 Sobic010G201000--Sobic003G367401 Sobic010G201000--Sobic007G093400 Sobic010G201000--Sobic002G430200 Sobic010G074980 Sobic010G074980 Sobic010G201000--Sobic010G074980 Sobic010G201000--Sobic001G525000 Sobic010G201000--Sobic002G387100 Sobic010G201000--Sobic003G120400 Sobic001G016900 Sobic001G016900 Sobic010G201000--Sobic001G016900 Sobic003G099500 Sobic003G099500 Sobic010G201000--Sobic003G099500
Octagon: transcription factors


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