Gene annotation
Transcriptome id Sobic.006G069050.1
Synonym -
Functional annotation -
UniProt A0A1Z5RCM4
Pfam PF04564
Panther DB PTHR23315 PTHR23315:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G54850 : plant U-box 14
RAP-DB (Rice) LOC_Os02g28720.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a020339 , Zm00025a020340
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G126400 expressed protein -
2 Sobic.003G038300 - -
3 Sobic.004G152501 - -
4 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
5 Sobic.003G065001 - -
6 Sobic.006G058300 expressed protein -
7 Sobic.010G201000 - -
8 Sobic.003G167825 - -
9 Sobic.010G074980 - -
10 Sobic.003G427500 cytochrome P450, putative, expressed -
11 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
12 Sobic.007G093400 - -
13 Sobic.003G367401 - -
14 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
15 Sobic.009G258150 - -
16 Sobic.003G120400 expressed protein -
17 Sobic.001G525000 polygalacturonase, putative, expressed -
18 Sobic.009G085600 acetyltransferase, GNAT family, putative, expressed -
19 Sobic.003G149900 PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic006G069050 Sobic006G069050 Sobic003G126400 Sobic003G126400 Sobic006G069050--Sobic003G126400 Sobic003G038300 Sobic003G038300 Sobic006G069050--Sobic003G038300 Sobic004G152501 Sobic004G152501 Sobic006G069050--Sobic004G152501 Sobic001G115900 Sobic001G115900 Sobic006G069050--Sobic001G115900 Sobic003G065001 Sobic003G065001 Sobic006G069050--Sobic003G065001 Sobic006G058300 Sobic006G058300 Sobic006G069050--Sobic006G058300 Sobic010G201000 Sobic010G201000 Sobic006G069050--Sobic010G201000 Sobic003G167825 Sobic003G167825 Sobic006G069050--Sobic003G167825 Sobic010G074980 Sobic010G074980 Sobic006G069050--Sobic010G074980 Sobic003G126400--Sobic006G069050 Sobic003G126400--Sobic001G115900 Sobic003G126400--Sobic003G038300 Sobic003G427500 Sobic003G427500 Sobic003G126400--Sobic003G427500 Sobic003G126400--Sobic003G167825 Sobic003G126400--Sobic010G201000 Sobic007G093400 Sobic007G093400 Sobic003G126400--Sobic007G093400 Sobic003G126400--Sobic003G065001 Sobic003G126400--Sobic004G152501 Sobic003G038300--Sobic003G126400 Sobic003G038300--Sobic003G167825 Sobic009G085600 Sobic009G085600 Sobic003G038300--Sobic009G085600 Sobic003G038300--Sobic006G069050 Sobic003G038300--Sobic001G115900 Sobic004G016600 Sobic004G016600 Sobic003G038300--Sobic004G016600 Sobic003G038300--Sobic010G201000 Sobic001G016900 Sobic001G016900 Sobic003G038300--Sobic001G016900 Sobic003G038300--Sobic004G152501 Sobic004G152501--Sobic006G069050 Sobic004G152501--Sobic003G038300 Sobic004G152501--Sobic003G126400 Sobic004G152501--Sobic010G201000 Sobic004G152501--Sobic010G074980 Sobic004G152501--Sobic001G115900 Sobic004G082151 Sobic004G082151 Sobic004G152501--Sobic004G082151 Sobic004G152501--Sobic003G427500 Sobic009G258150 Sobic009G258150 Sobic004G152501--Sobic009G258150 Sobic001G115900--Sobic003G126400 Sobic003G379500 Sobic003G379500 Sobic001G115900--Sobic003G379500 Sobic001G115900--Sobic003G038300 Sobic001G115900--Sobic006G069050 Sobic001G115900--Sobic003G065001 Sobic001G115900--Sobic009G258150 Sobic001G115900--Sobic003G167825 Sobic001G115900--Sobic009G085600 Sobic003G367401 Sobic003G367401 Sobic001G115900--Sobic003G367401 Sobic003G065001--Sobic007G093400 Sobic003G065001--Sobic003G367401 Sobic003G065001--Sobic010G201000 Sobic002G320900 Sobic002G320900 Sobic003G065001--Sobic002G320900 Sobic002G210200 Sobic002G210200 Sobic003G065001--Sobic002G210200 Sobic001G525000 Sobic001G525000 Sobic003G065001--Sobic001G525000 Sobic003G200501 Sobic003G200501 Sobic003G065001--Sobic003G200501 Sobic003G120400 Sobic003G120400 Sobic003G065001--Sobic003G120400 Sobic003G065001--Sobic010G074980 Sobic003G149900 Sobic003G149900 Sobic006G058300--Sobic003G149900 Sobic006G058300--Sobic004G016600 Sobic006G058300--Sobic003G038300 Sobic006G058300--Sobic003G126400 Sobic006G058300--Sobic006G069050 Sobic008G020300 Sobic008G020300 Sobic006G058300--Sobic008G020300 Sobic009G152901 Sobic009G152901 Sobic006G058300--Sobic009G152901 Sobic001G537900 Sobic001G537900 Sobic006G058300--Sobic001G537900 Sobic001G407000 Sobic001G407000 Sobic006G058300--Sobic001G407000 Sobic010G201000--Sobic003G367401 Sobic010G201000--Sobic007G093400 Sobic002G430200 Sobic002G430200 Sobic010G201000--Sobic002G430200 Sobic010G201000--Sobic010G074980 Sobic010G201000--Sobic001G525000 Sobic002G387100 Sobic002G387100 Sobic010G201000--Sobic002G387100 Sobic010G201000--Sobic003G120400 Sobic010G201000--Sobic001G016900 Sobic003G099500 Sobic003G099500 Sobic010G201000--Sobic003G099500 Sobic003G167825--Sobic009G085600 Sobic001G460800 Sobic001G460800 Sobic003G167825--Sobic001G460800 Sobic002G004100 Sobic002G004100 Sobic003G167825--Sobic002G004100 Sobic003G167825--Sobic004G016600 Sobic008G119000 Sobic008G119000 Sobic003G167825--Sobic008G119000 Sobic003G167825--Sobic003G038300 Sobic003G167825--Sobic001G016900 Sobic002G285800 Sobic002G285800 Sobic003G167825--Sobic002G285800 Sobic003G167825--Sobic003G126400 Sobic010G074980--Sobic010G201000 Sobic010G074980--Sobic007G093400 Sobic010G074980--Sobic004G082151 Sobic010G074980--Sobic003G427500 Sobic006G065700 Sobic006G065700 Sobic010G074980--Sobic006G065700 Sobic010G074980--Sobic003G120400 Sobic010G074980--Sobic001G525000 Sobic010G074980--Sobic002G320900 Sobic010G074980--Sobic003G367401
Octagon: transcription factors


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