Gene annotation
Transcriptome id Sobic.003G149900.2
Synonym Sb03g013016
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1W0VXE9
Pfam PF13041 PF01535
Panther DB PTHR24015:SF425 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53170 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g02430.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000216
Brachypodium KQK24011
Barley HORVU4Hr1G086600.6 , HORVU4Hr1G086600.7 , HORVU4Hr1G086600.4 , HORVU4Hr1G086600.5 , HORVU4Hr1G086600.2 , HORVU4Hr1G086600.3 , HORVU4Hr1G086600.1 , HORVU4Hr1G086600.8 , HORVU4Hr1G086600.9 , HORVU4Hr1G086600.18 , HORVU4Hr1G086600.19 , HORVU4Hr1G086600.14 , HORVU4Hr1G086600.15 , HORVU4Hr1G086600.16 , HORVU4Hr1G086600.17 , HORVU4Hr1G086600.10 , HORVU4Hr1G086600.11 , HORVU4Hr1G086600.21 , HORVU4Hr1G086600.20 , HORVU4Hr1G086600.12
Wheat TraesCS5A02G528400 , TraesCS4B02G359900 , TraesCS5A02G528400 , TraesCS4D02G353200 , TraesCS4D02G353200
Populus -


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cDNA sequences
Sobic.003G149900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058300 expressed protein -
2 Sobic.009G152901 - -
3 Sobic.001G537900 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4
4 Sobic.008G020300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.004G354800 - -
7 Sobic.001G016900 RNA-binding protein Luc7-like, putative, expressed -
8 Sobic.001G120100 DUF1295 domain containing protein, putative, expressed -
9 Sobic.003G038300 - -
10 Sobic.003G008850 - -
11 Sobic.004G239000 - -
12 Sobic.005G076100 rp3 protein, putative, expressed -
13 Sobic.006G037000 - -
14 Sobic.003G105300 - -
15 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
17 Sobic.006G069050 - -
18 Sobic.003G367401 - -
19 Sobic.007G174100 carrier, putative, expressed -
20 Sobic.001G541900 "similar to Nitrate/chlorate transporter, putative, expressed"(PubMedID : 29862293)@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic003G149900 Sobic003G149900 Sobic006G058300 Sobic006G058300 Sobic003G149900--Sobic006G058300 Sobic009G152901 Sobic009G152901 Sobic003G149900--Sobic009G152901 Sobic001G537900 Sobic001G537900 Sobic003G149900--Sobic001G537900 Sobic008G020300 Sobic008G020300 Sobic003G149900--Sobic008G020300 Sobic004G016600 Sobic004G016600 Sobic003G149900--Sobic004G016600 Sobic004G354800 Sobic004G354800 Sobic003G149900--Sobic004G354800 Sobic001G016900 Sobic001G016900 Sobic003G149900--Sobic001G016900 Sobic001G120100 Sobic001G120100 Sobic003G149900--Sobic001G120100 Sobic003G038300 Sobic003G038300 Sobic003G149900--Sobic003G038300 Sobic006G058300--Sobic003G149900 Sobic006G058300--Sobic004G016600 Sobic006G058300--Sobic003G038300 Sobic003G126400 Sobic003G126400 Sobic006G058300--Sobic003G126400 Sobic006G069050 Sobic006G069050 Sobic006G058300--Sobic006G069050 Sobic006G058300--Sobic008G020300 Sobic006G058300--Sobic009G152901 Sobic006G058300--Sobic001G537900 Sobic001G407000 Sobic001G407000 Sobic006G058300--Sobic001G407000 Sobic004G239000 Sobic004G239000 Sobic009G152901--Sobic004G239000 Sobic009G152901--Sobic001G016900 Sobic003G367401 Sobic003G367401 Sobic009G152901--Sobic003G367401 Sobic009G152901--Sobic001G120100 Sobic009G152901--Sobic004G016600 Sobic003G368150 Sobic003G368150 Sobic009G152901--Sobic003G368150 Sobic004G197300 Sobic004G197300 Sobic009G152901--Sobic004G197300 Sobic009G152901--Sobic001G537900 Sobic010G201000 Sobic010G201000 Sobic009G152901--Sobic010G201000 Sobic001G537900--Sobic008G020300 Sobic001G537900--Sobic001G120100 Sobic010G179150 Sobic010G179150 Sobic001G537900--Sobic010G179150 Sobic001G537900--Sobic004G354800 Sobic004G251350 Sobic004G251350 Sobic001G537900--Sobic004G251350 Sobic001G537900--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic001G537900--Sobic009G163500 Sobic003G008850 Sobic003G008850 Sobic001G537900--Sobic003G008850 Sobic007G111600 Sobic007G111600 Sobic001G537900--Sobic007G111600 Sobic008G020300--Sobic001G537900 Sobic003G105300 Sobic003G105300 Sobic008G020300--Sobic003G105300 Sobic008G020300--Sobic001G407000 Sobic003G109400 Sobic003G109400 Sobic008G020300--Sobic003G109400 Sobic001G255700 Sobic001G255700 Sobic008G020300--Sobic001G255700 Sobic008G020300--Sobic009G163500 Sobic008G020300--Sobic004G197300 Sobic008G020300--Sobic004G354800 Sobic007G001300 Sobic007G001300 Sobic008G020300--Sobic007G001300 Sobic004G016600--Sobic001G120100 Sobic004G016600--Sobic001G016900 Sobic009G085600 Sobic009G085600 Sobic004G016600--Sobic009G085600 Sobic004G016600--Sobic004G251350 Sobic004G016600--Sobic001G537900 Sobic007G013100 Sobic007G013100 Sobic004G016600--Sobic007G013100 Sobic003G167825 Sobic003G167825 Sobic004G016600--Sobic003G167825 Sobic004G016600--Sobic007G111600 Sobic004G016600--Sobic009G152901 Sobic004G354800--Sobic009G163500 Sobic004G354800--Sobic001G537900 Sobic004G354800--Sobic003G109400 Sobic004G354800--Sobic008G020300 Sobic003G136700 Sobic003G136700 Sobic004G354800--Sobic003G136700 Sobic004G354800--Sobic004G197300 Sobic008G131800 Sobic008G131800 Sobic004G354800--Sobic008G131800 Sobic004G354800--Sobic009G152901 Sobic004G354800--Sobic001G255700 Sobic001G016900--Sobic004G239000 Sobic003G099500 Sobic003G099500 Sobic001G016900--Sobic003G099500 Sobic001G016900--Sobic003G367401 Sobic001G016900--Sobic007G111600 Sobic001G016900--Sobic008G131800 Sobic002G430200 Sobic002G430200 Sobic001G016900--Sobic002G430200 Sobic001G016900--Sobic010G201000 Sobic002G004100 Sobic002G004100 Sobic001G016900--Sobic002G004100 Sobic001G016900--Sobic004G016600 Sobic001G120100--Sobic001G537900 Sobic001G120100--Sobic004G016600 Sobic001G120100--Sobic007G111600 Sobic001G120100--Sobic004G251350 Sobic001G120100--Sobic001G016900 Sobic001G120100--Sobic003G008850 Sobic001G120100--Sobic010G179150 Sobic001G120100--Sobic009G152901 Sobic007G204500 Sobic007G204500 Sobic001G120100--Sobic007G204500 Sobic003G038300--Sobic003G126400 Sobic003G038300--Sobic003G167825 Sobic003G038300--Sobic009G085600 Sobic003G038300--Sobic006G069050 Sobic001G115900 Sobic001G115900 Sobic003G038300--Sobic001G115900 Sobic003G038300--Sobic004G016600 Sobic003G038300--Sobic010G201000 Sobic003G038300--Sobic001G016900 Sobic004G152501 Sobic004G152501 Sobic003G038300--Sobic004G152501
Octagon: transcription factors


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