Gene annotation
Transcriptome id Sobic.002G271900.2,Sobic.002G271900.1
Synonym VPS22, Sb02g030570
Functional annotation EAP30/Vps36 family domain containing protein, expressed
UniProt C5X635 , A0A1W0W601
Pfam PF04157
Panther DB PTHR12806 PTHR12806:SF0
NCBI CDD KOG3341; RNA polymerase II transcription factor complex subunit
KEGG Orthology K12188; SNF8, ESCRT-II complex subunit VPS22
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27040 : EAP30/Vps36 family protein
RAP-DB (Rice) LOC_Os09g36020.1 : EAP30/Vps36 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014404
Brachypodium KQJ91140
Barley -
Wheat TraesCS5A02G316100 , TraesCS5D02G322300 , TraesCS5B02G420800 , TraesCS5B02G316600 , TraesCS5B02G316600
Populus -


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cDNA sequences
Sobic.002G271900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G229600 serine/threonine-protein kinase receptor precursor, putative, expressed -
2 Sobic.009G004300 ECT protein, putative, expressed -
3 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.002G133600 - -
5 Sobic.006G110600 - -
6 Sobic.006G058300 expressed protein -
7 Sobic.004G012100 basic helix-loop-helix DND-binding domain containing protein, expressed -
8 Sobic.010G155901 - -
9 Sobic.009G258150 - -
10 Sobic.003G313700 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
11 Sobic.010G257300 serine esterase, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
12 Sobic.004G152501 - -
13 Sobic.006G069050 - -
14 Sobic.006G257500 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
15 Sobic.001G212701 - -
16 Sobic.007G174100 carrier, putative, expressed -
17 Sobic.010G132300 CDK5RAP3, putative, expressed -
18 Sobic.003G038300 - -
19 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
20 Sobic.003G149900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G271900 Sobic002G271900 Sobic006G229600 Sobic006G229600 Sobic002G271900--Sobic006G229600 Sobic009G004300 Sobic009G004300 Sobic002G271900--Sobic009G004300 Sobic002G326200 Sobic002G326200 Sobic002G271900--Sobic002G326200 Sobic002G133600 Sobic002G133600 Sobic002G271900--Sobic002G133600 Sobic006G110600 Sobic006G110600 Sobic002G271900--Sobic006G110600 Sobic006G058300 Sobic006G058300 Sobic002G271900--Sobic006G058300 Sobic004G012100 Sobic004G012100 Sobic002G271900--Sobic004G012100 Sobic010G155901 Sobic010G155901 Sobic002G271900--Sobic010G155901 Sobic009G258150 Sobic009G258150 Sobic002G271900--Sobic009G258150 Sobic006G229600--Sobic002G271900 Sobic006G069050 Sobic006G069050 Sobic006G229600--Sobic006G069050 Sobic006G229600--Sobic009G258150 Sobic006G229600--Sobic004G012100 Sobic004G152501 Sobic004G152501 Sobic006G229600--Sobic004G152501 Sobic006G229600--Sobic006G058300 Sobic003G126400 Sobic003G126400 Sobic006G229600--Sobic003G126400 Sobic006G229600--Sobic002G133600 Sobic010G257300 Sobic010G257300 Sobic006G229600--Sobic010G257300 Sobic006G232300 Sobic006G232300 Sobic009G004300--Sobic006G232300 Sobic009G004300--Sobic002G271900 Sobic009G004300--Sobic006G229600 Sobic009G004300--Sobic010G257300 Sobic003G155350 Sobic003G155350 Sobic009G004300--Sobic003G155350 Sobic004G230800 Sobic004G230800 Sobic009G004300--Sobic004G230800 Sobic009G004300--Sobic002G133600 Sobic009G004300--Sobic004G012100 Sobic006G093400 Sobic006G093400 Sobic009G004300--Sobic006G093400 Sobic007G174100 Sobic007G174100 Sobic002G326200--Sobic007G174100 Sobic010G200800 Sobic010G200800 Sobic002G326200--Sobic010G200800 Sobic005G076100 Sobic005G076100 Sobic002G326200--Sobic005G076100 Sobic003G149900 Sobic003G149900 Sobic002G326200--Sobic003G149900 Sobic002G326200--Sobic006G058300 Sobic003G008850 Sobic003G008850 Sobic002G326200--Sobic003G008850 Sobic002G326200--Sobic010G257300 Sobic001G115900 Sobic001G115900 Sobic002G326200--Sobic001G115900 Sobic002G326200--Sobic009G258150 Sobic003G101600 Sobic003G101600 Sobic002G133600--Sobic003G101600 Sobic002G133600--Sobic002G271900 Sobic004G314750 Sobic004G314750 Sobic002G133600--Sobic004G314750 Sobic002G133600--Sobic006G229600 Sobic002G133600--Sobic004G152501 Sobic003G313700 Sobic003G313700 Sobic002G133600--Sobic003G313700 Sobic006G257500 Sobic006G257500 Sobic002G133600--Sobic006G257500 Sobic002G133600--Sobic009G004300 Sobic008G166250 Sobic008G166250 Sobic002G133600--Sobic008G166250 Sobic006G110600--Sobic002G271900 Sobic001G212701 Sobic001G212701 Sobic006G110600--Sobic001G212701 Sobic006G110600--Sobic003G313700 Sobic010G132300 Sobic010G132300 Sobic006G110600--Sobic010G132300 Sobic006G110600--Sobic002G326200 Sobic006G110600--Sobic006G229600 Sobic006G110600--Sobic004G314750 Sobic006G110600--Sobic002G133600 Sobic006G110600--Sobic007G174100 Sobic006G058300--Sobic003G149900 Sobic004G016600 Sobic004G016600 Sobic006G058300--Sobic004G016600 Sobic003G038300 Sobic003G038300 Sobic006G058300--Sobic003G038300 Sobic006G058300--Sobic003G126400 Sobic006G058300--Sobic006G069050 Sobic008G020300 Sobic008G020300 Sobic006G058300--Sobic008G020300 Sobic009G152901 Sobic009G152901 Sobic006G058300--Sobic009G152901 Sobic001G537900 Sobic001G537900 Sobic006G058300--Sobic001G537900 Sobic001G407000 Sobic001G407000 Sobic006G058300--Sobic001G407000 Sobic010G253700 Sobic010G253700 Sobic004G012100--Sobic010G253700 Sobic004G012100--Sobic010G257300 Sobic010G242100 Sobic010G242100 Sobic004G012100--Sobic010G242100 Sobic001G068901 Sobic001G068901 Sobic004G012100--Sobic001G068901 Sobic001G537600 Sobic001G537600 Sobic004G012100--Sobic001G537600 Sobic004G012100--Sobic009G258150 Sobic003G379500 Sobic003G379500 Sobic004G012100--Sobic003G379500 Sobic004G012100--Sobic006G229600 Sobic004G012100--Sobic006G093400 Sobic003G400332 Sobic003G400332 Sobic010G155901--Sobic003G400332 Sobic010G155901--Sobic006G058300 Sobic010G155901--Sobic001G407000 Sobic010G155901--Sobic010G132300 Sobic010G155901--Sobic008G020300 Sobic010G155901--Sobic003G149900 Sobic001G139750 Sobic001G139750 Sobic010G155901--Sobic001G139750 Sobic001G541900 Sobic001G541900 Sobic010G155901--Sobic001G541900 Sobic003G105300 Sobic003G105300 Sobic010G155901--Sobic003G105300 Sobic009G258150--Sobic003G379500 Sobic009G258150--Sobic001G115900 Sobic009G258150--Sobic003G038300 Sobic009G238200 Sobic009G238200 Sobic009G258150--Sobic009G238200 Sobic009G258150--Sobic006G069050 Sobic009G258150--Sobic003G126400 Sobic009G258150--Sobic004G152501 Sobic009G258150--Sobic010G257300 Sobic010G244701 Sobic010G244701 Sobic009G258150--Sobic010G244701
Octagon: transcription factors


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