Gene annotation
Transcriptome id Sobic.010G257300.13,Sobic.010G257300.16,Sobic.010G257300.8,Sobic.010G257300.15,Sobic.010G257300.17,Sobic.010G257300.25,Sobic.010G257300.21,Sobic.010G257300.7,Sobic.010G257300.20,Sobic.010G257300.1,Sobic.010G257300.18,Sobic.010G257300.19,Sobic.010G257300.2,Sobic.010G257300.6,Sobic.010G257300.4,Sobic.010G257300.14,Sobic.010G257300.9,Sobic.010G257300.5,Sobic.010G257300.22,Sobic.010G257300.10,Sobic.010G257300.23,Sobic.010G257300.24,Sobic.010G257300.3,Sobic.010G257300.12,Sobic.010G257300.11
Synonym ATPCME, PCME, Sb10g029410
Functional annotation serine esterase, putative, expressed
UniProt A0A194YMJ6 , A0A1W0VUW5 , A0A1W0VUW8 , A0A1W0VUS0 , A0A194YLH0 , A0A1W0VUU1 , A0A1W0VUV7 , A0A1W0VUX1 , A0A1W0VUU9 , A0A1W0VUX3 , A0A1W0VUT3 , A0A1W0VUV3 , A0A1W0VUT0 , A0A1W0VUW3 , A0A1W0VUT9 , A0A1W0VUV1 , C5Z9B9 , A0A1W0VUV8
Pfam PF07859 PF00135 PF00326 PF00135 PF00326
Panther DB PTHR23024 PTHR23024:SF234
NCBI CDD -
KEGG Orthology K15889; prenylcysteine alpha-carboxyl methylesterase
Gene Ontology GO:0016787; hydrolase activity GO:0008152metabolic process GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G15860 : prenylcysteine methylesterase
RAP-DB (Rice) LOC_Os06g49440.1 : serine esterase, putative, expressed
MaizeGDB (Corn) Zm00025a018422
Brachypodium KQK17479 , KQK17478
Barley HORVU5Hr1G038450.2 , HORVU5Hr1G038450.1 , HORVU5Hr1G038450.7 , HORVU5Hr1G038450.6 , HORVU5Hr1G038450.5 , HORVU5Hr1G038450.4 , HORVU5Hr1G038450.9 , HORVU5Hr1G038450.8 , HORVU5Hr1G038450.12 , HORVU5Hr1G038450.11 , HORVU5Hr1G038450.10 , HORVU5Hr1G038450.17 , HORVU5Hr1G038450.16 , HORVU5Hr1G038450.15 , HORVU5Hr1G038450.14
Wheat TraesCS7B02G309800 , TraesCS7D02G403600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G093400 potassium channel SKOR, putative, expressed -
2 Sobic.004G012100 basic helix-loop-helix DND-binding domain containing protein, expressed -
3 Sobic.009G258150 - -
4 Sobic.001G068901 - -
5 Sobic.010G253700 - -
6 Sobic.001G537600 expressed protein -
7 Sobic.009G072400 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
9 Sobic.003G379500 gibberellin 20 oxidase 2, putative, expressed -
10 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.001G212701 - -
12 Sobic.009G114900 - -
13 Sobic.006G229600 serine/threonine-protein kinase receptor precursor, putative, expressed -
14 Sobic.010G242100 cytochrome P450 domain containing protein, expressed -
15 Sobic.001G204200 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.006G146400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.010G106400 - -
18 Sobic.005G155001 - -
19 Sobic.006G232300 cytochrome P450 72A1, putative, expressed -
20 Sobic.009G004300 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic010G257300 Sobic010G257300 Sobic006G093400 Sobic006G093400 Sobic010G257300--Sobic006G093400 Sobic004G012100 Sobic004G012100 Sobic010G257300--Sobic004G012100 Sobic009G258150 Sobic009G258150 Sobic010G257300--Sobic009G258150 Sobic001G068901 Sobic001G068901 Sobic010G257300--Sobic001G068901 Sobic010G253700 Sobic010G253700 Sobic010G257300--Sobic010G253700 Sobic001G537600 Sobic001G537600 Sobic010G257300--Sobic001G537600 Sobic009G072400 Sobic009G072400 Sobic010G257300--Sobic009G072400 Sobic008G096900 Sobic008G096900 Sobic010G257300--Sobic008G096900 Sobic003G379500 Sobic003G379500 Sobic010G257300--Sobic003G379500 Sobic006G093400--Sobic010G257300 Sobic006G093400--Sobic001G068901 Sobic006G232300 Sobic006G232300 Sobic006G093400--Sobic006G232300 Sobic009G114900 Sobic009G114900 Sobic006G093400--Sobic009G114900 Sobic006G093400--Sobic010G253700 Sobic006G093400--Sobic004G012100 Sobic005G155001 Sobic005G155001 Sobic006G093400--Sobic005G155001 Sobic001G483200 Sobic001G483200 Sobic006G093400--Sobic001G483200 Sobic006G093400--Sobic001G537600 Sobic004G012100--Sobic010G253700 Sobic004G012100--Sobic010G257300 Sobic010G242100 Sobic010G242100 Sobic004G012100--Sobic010G242100 Sobic004G012100--Sobic001G068901 Sobic004G012100--Sobic001G537600 Sobic004G012100--Sobic009G258150 Sobic004G012100--Sobic003G379500 Sobic006G229600 Sobic006G229600 Sobic004G012100--Sobic006G229600 Sobic004G012100--Sobic006G093400 Sobic009G258150--Sobic003G379500 Sobic001G115900 Sobic001G115900 Sobic009G258150--Sobic001G115900 Sobic003G038300 Sobic003G038300 Sobic009G258150--Sobic003G038300 Sobic009G238200 Sobic009G238200 Sobic009G258150--Sobic009G238200 Sobic006G069050 Sobic006G069050 Sobic009G258150--Sobic006G069050 Sobic003G126400 Sobic003G126400 Sobic009G258150--Sobic003G126400 Sobic004G152501 Sobic004G152501 Sobic009G258150--Sobic004G152501 Sobic009G258150--Sobic010G257300 Sobic010G244701 Sobic010G244701 Sobic009G258150--Sobic010G244701 Sobic001G068901--Sobic001G537600 Sobic001G068901--Sobic010G242100 Sobic001G068901--Sobic006G093400 Sobic001G068901--Sobic009G072400 Sobic001G068901--Sobic010G257300 Sobic001G068901--Sobic010G253700 Sobic001G068901--Sobic004G012100 Sobic010G106400 Sobic010G106400 Sobic001G068901--Sobic010G106400 Sobic001G308450 Sobic001G308450 Sobic001G068901--Sobic001G308450 Sobic010G253700--Sobic004G012100 Sobic010G253700--Sobic010G242100 Sobic010G253700--Sobic001G068901 Sobic010G253700--Sobic010G257300 Sobic010G253700--Sobic001G537600 Sobic010G253700--Sobic006G093400 Sobic010G253700--Sobic008G096900 Sobic010G253700--Sobic010G106400 Sobic010G253700--Sobic009G114900 Sobic001G537600--Sobic010G106400 Sobic001G537600--Sobic001G068901 Sobic006G146400 Sobic006G146400 Sobic001G537600--Sobic006G146400 Sobic001G537600--Sobic009G238200 Sobic006G280900 Sobic006G280900 Sobic001G537600--Sobic006G280900 Sobic006G065200 Sobic006G065200 Sobic001G537600--Sobic006G065200 Sobic001G537600--Sobic010G257300 Sobic001G537600--Sobic004G012100 Sobic006G103601 Sobic006G103601 Sobic001G537600--Sobic006G103601 Sobic009G072400--Sobic001G068901 Sobic009G072400--Sobic010G257300 Sobic009G072400--Sobic006G093400 Sobic009G072400--Sobic004G012100 Sobic009G072400--Sobic001G537600 Sobic009G072400--Sobic010G242100 Sobic009G072400--Sobic008G096900 Sobic009G072400--Sobic010G253700 Sobic001G435800 Sobic001G435800 Sobic009G072400--Sobic001G435800 Sobic006G037000 Sobic006G037000 Sobic008G096900--Sobic006G037000 Sobic007G174100 Sobic007G174100 Sobic008G096900--Sobic007G174100 Sobic008G096900--Sobic010G257300 Sobic008G096900--Sobic001G537600 Sobic005G076100 Sobic005G076100 Sobic008G096900--Sobic005G076100 Sobic008G096900--Sobic004G012100 Sobic008G096900--Sobic010G253700 Sobic009G031300 Sobic009G031300 Sobic008G096900--Sobic009G031300 Sobic002G326200 Sobic002G326200 Sobic008G096900--Sobic002G326200 Sobic003G379500--Sobic001G115900 Sobic003G379500--Sobic009G258150 Sobic003G379500--Sobic010G244701 Sobic003G379500--Sobic003G126400 Sobic003G379500--Sobic009G238200 Sobic003G167825 Sobic003G167825 Sobic003G379500--Sobic003G167825 Sobic003G379500--Sobic003G038300 Sobic003G379500--Sobic006G103601 Sobic003G379500--Sobic006G146400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.