Gene annotation
Transcriptome id Sobic.003G379500.2,Sobic.003G379500.4,Sobic.003G379500.1,Sobic.003G379500.3
Synonym GA5, ATGA20OX1, AT2301, GA20OX1, Sb03g041900
Functional annotation gibberellin 20 oxidase 2, putative, expressed
UniProt A0A1W0W0U5 , A0A1W0W0U0 , A0A1W0W0U3 , A0A1W0W0X0
Pfam PF03171 PF14226 PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF129
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G25420 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os01g66100.1 : gibberellin 20 oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a009112 , Zm00025a026549 , Zm00025a039492
Brachypodium PNT73324 , KQK06181 , KQK10912 , PNT71228 , KQK10911
Barley HORVU5Hr1G124120.5 , HORVU5Hr1G124120.4 , HORVU5Hr1G124120.1 , HORVU5Hr1G124120.3 , HORVU5Hr1G124120.2 , HORVU1Hr1G063780.7 , HORVU1Hr1G063780.2 , HORVU3Hr1G090980.1 , HORVU3Hr1G090980.5 , HORVU3Hr1G090980.3 , HORVU3Hr1G090980.2 , HORVU3Hr1G090980.4 , HORVU3Hr1G090980.6
Wheat TraesCS3D02G401400 , TraesCS2B02G076400 , TraesCS4A02G319100 , TraesCS1D02G263700 , TraesCS5B02G560300 , TraesCS5D02G566200 , TraesCS1A02G263600 , TraesCS3B02G439900 , TraesCS3A02G406200 , TraesCS1B02G274200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
2 Sobic.009G258150 - -
3 Sobic.010G244701 - -
4 Sobic.003G126400 expressed protein -
5 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
6 Sobic.003G167825 - -
7 Sobic.003G038300 - -
8 Sobic.006G103601 - -
9 Sobic.006G146400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.006G069050 - -
11 Sobic.004G012100 basic helix-loop-helix DND-binding domain containing protein, expressed -
12 Sobic.004G152501 - -
13 Sobic.009G085600 acetyltransferase, GNAT family, putative, expressed -
14 Sobic.009G250800 Up-reguralion under heat(PubMedID : 24916767)@polygalacturonase, putative, expressed -
15 Sobic.010G257300 serine esterase, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
16 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
18 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.001G537600 expressed protein -
20 Sobic.005G076100 rp3 protein, putative, expressed -


Gene co-expression network
sample Sobic003G379500 Sobic003G379500 Sobic001G115900 Sobic001G115900 Sobic003G379500--Sobic001G115900 Sobic009G258150 Sobic009G258150 Sobic003G379500--Sobic009G258150 Sobic010G244701 Sobic010G244701 Sobic003G379500--Sobic010G244701 Sobic003G126400 Sobic003G126400 Sobic003G379500--Sobic003G126400 Sobic009G238200 Sobic009G238200 Sobic003G379500--Sobic009G238200 Sobic003G167825 Sobic003G167825 Sobic003G379500--Sobic003G167825 Sobic003G038300 Sobic003G038300 Sobic003G379500--Sobic003G038300 Sobic006G103601 Sobic006G103601 Sobic003G379500--Sobic006G103601 Sobic006G146400 Sobic006G146400 Sobic003G379500--Sobic006G146400 Sobic001G115900--Sobic003G126400 Sobic001G115900--Sobic003G379500 Sobic001G115900--Sobic003G038300 Sobic006G069050 Sobic006G069050 Sobic001G115900--Sobic006G069050 Sobic003G065001 Sobic003G065001 Sobic001G115900--Sobic003G065001 Sobic001G115900--Sobic009G258150 Sobic001G115900--Sobic003G167825 Sobic009G085600 Sobic009G085600 Sobic001G115900--Sobic009G085600 Sobic003G367401 Sobic003G367401 Sobic001G115900--Sobic003G367401 Sobic009G258150--Sobic003G379500 Sobic009G258150--Sobic001G115900 Sobic009G258150--Sobic003G038300 Sobic009G258150--Sobic009G238200 Sobic009G258150--Sobic006G069050 Sobic009G258150--Sobic003G126400 Sobic004G152501 Sobic004G152501 Sobic009G258150--Sobic004G152501 Sobic010G257300 Sobic010G257300 Sobic009G258150--Sobic010G257300 Sobic009G258150--Sobic010G244701 Sobic006G256801 Sobic006G256801 Sobic010G244701--Sobic006G256801 Sobic010G244701--Sobic003G379500 Sobic004G314750 Sobic004G314750 Sobic010G244701--Sobic004G314750 Sobic001G434450 Sobic001G434450 Sobic010G244701--Sobic001G434450 Sobic008G164525 Sobic008G164525 Sobic010G244701--Sobic008G164525 Sobic001G089200 Sobic001G089200 Sobic010G244701--Sobic001G089200 Sobic010G244701--Sobic001G115900 Sobic010G244701--Sobic009G258150 Sobic010G244701--Sobic009G085600 Sobic003G126400--Sobic006G069050 Sobic003G126400--Sobic001G115900 Sobic003G126400--Sobic003G038300 Sobic003G427500 Sobic003G427500 Sobic003G126400--Sobic003G427500 Sobic003G126400--Sobic003G167825 Sobic010G201000 Sobic010G201000 Sobic003G126400--Sobic010G201000 Sobic007G093400 Sobic007G093400 Sobic003G126400--Sobic007G093400 Sobic003G126400--Sobic003G065001 Sobic003G126400--Sobic004G152501 Sobic002G116300 Sobic002G116300 Sobic009G238200--Sobic002G116300 Sobic009G238200--Sobic001G115900 Sobic009G238200--Sobic003G167825 Sobic009G238200--Sobic006G103601 Sobic009G238200--Sobic006G069050 Sobic009G238200--Sobic009G258150 Sobic009G238200--Sobic006G146400 Sobic009G238200--Sobic009G085600 Sobic009G238200--Sobic003G126400 Sobic003G167825--Sobic009G085600 Sobic001G460800 Sobic001G460800 Sobic003G167825--Sobic001G460800 Sobic002G004100 Sobic002G004100 Sobic003G167825--Sobic002G004100 Sobic004G016600 Sobic004G016600 Sobic003G167825--Sobic004G016600 Sobic008G119000 Sobic008G119000 Sobic003G167825--Sobic008G119000 Sobic003G167825--Sobic003G038300 Sobic001G016900 Sobic001G016900 Sobic003G167825--Sobic001G016900 Sobic002G285800 Sobic002G285800 Sobic003G167825--Sobic002G285800 Sobic003G167825--Sobic003G126400 Sobic003G038300--Sobic003G126400 Sobic003G038300--Sobic003G167825 Sobic003G038300--Sobic009G085600 Sobic003G038300--Sobic006G069050 Sobic003G038300--Sobic001G115900 Sobic003G038300--Sobic004G016600 Sobic003G038300--Sobic010G201000 Sobic003G038300--Sobic001G016900 Sobic003G038300--Sobic004G152501 Sobic006G103601--Sobic009G238200 Sobic006G103601--Sobic002G285800 Sobic010G106400 Sobic010G106400 Sobic006G103601--Sobic010G106400 Sobic006G103601--Sobic002G116300 Sobic006G103601--Sobic006G146400 Sobic009G174600 Sobic009G174600 Sobic006G103601--Sobic009G174600 Sobic001G537600 Sobic001G537600 Sobic006G103601--Sobic001G537600 Sobic006G103601--Sobic003G379500 Sobic006G103601--Sobic009G258150 Sobic006G280900 Sobic006G280900 Sobic006G146400--Sobic006G280900 Sobic006G222650 Sobic006G222650 Sobic006G146400--Sobic006G222650 Sobic006G146400--Sobic002G116300 Sobic006G146400--Sobic009G238200 Sobic006G146400--Sobic001G537600 Sobic004G302400 Sobic004G302400 Sobic006G146400--Sobic004G302400 Sobic010G035300 Sobic010G035300 Sobic006G146400--Sobic010G035300 Sobic006G146400--Sobic006G103601 Sobic006G146400--Sobic003G379500
Octagon: transcription factors


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