Gene annotation
Transcriptome id Sobic.006G146400.4,Sobic.006G146400.7,Sobic.006G146400.6,Sobic.006G146400.5
Synonym Sb06g022530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5RE05 , A0A1Z5RDY9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF677
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G09040 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os04g43430.2,LOC_Os04g43430.3 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a010688
Brachypodium PNT71915
Barley HORVU3Hr1G015010.12 , HORVU3Hr1G015010.13 , HORVU3Hr1G015010.10 , HORVU3Hr1G015010.11 , HORVU3Hr1G015010.16 , HORVU3Hr1G015010.17 , HORVU3Hr1G015010.14 , HORVU3Hr1G015010.15 , HORVU3Hr1G015010.18 , HORVU3Hr1G015010.19 , HORVU3Hr1G015010.8 , HORVU3Hr1G015010.9 , HORVU3Hr1G015010.1 , HORVU3Hr1G015010.2 , HORVU3Hr1G015010.3 , HORVU3Hr1G015010.4 , HORVU3Hr1G015010.5 , HORVU3Hr1G015010.6 , HORVU3Hr1G015010.7 , HORVU3Hr1G015010.28 , HORVU3Hr1G015010.23 , HORVU3Hr1G015010.22 , HORVU3Hr1G015010.21 , HORVU3Hr1G015010.20 , HORVU3Hr1G015010.27 , HORVU3Hr1G015010.26 , HORVU3Hr1G015010.25 , HORVU3Hr1G015010.24
Wheat TraesCSU02G006500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G280900 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.006G222650 - -
3 Sobic.002G116300 poly synthetase 1, putative, expressed K10798: poly [ADP-ribose] polymerase 2/3/4
4 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
5 Sobic.001G537600 expressed protein -
6 Sobic.004G302400 NAC domain containing protein, putative, expressed -
7 Sobic.010G035300 WRKY73, expressed -
8 Sobic.006G103601 - -
9 Sobic.003G379500 gibberellin 20 oxidase 2, putative, expressed -
10 Sobic.010G106400 - -
11 Sobic.004G269500 transcription factor TF2, putative, expressed -
12 Sobic.009G250800 Up-reguralion under heat(PubMedID : 24916767)@polygalacturonase, putative, expressed -
13 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
14 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
15 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
16 Sobic.010G244701 - -
17 Sobic.009G258150 - -
18 Sobic.003G167825 - -
19 Sobic.009G085600 acetyltransferase, GNAT family, putative, expressed -
20 Sobic.009G174600 OsFBX407 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G146400 Sobic006G146400 Sobic006G280900 Sobic006G280900 Sobic006G146400--Sobic006G280900 Sobic006G222650 Sobic006G222650 Sobic006G146400--Sobic006G222650 Sobic002G116300 Sobic002G116300 Sobic006G146400--Sobic002G116300 Sobic009G238200 Sobic009G238200 Sobic006G146400--Sobic009G238200 Sobic001G537600 Sobic001G537600 Sobic006G146400--Sobic001G537600 Sobic004G302400 Sobic004G302400 Sobic006G146400--Sobic004G302400 Sobic010G035300 Sobic010G035300 Sobic006G146400--Sobic010G035300 Sobic006G103601 Sobic006G103601 Sobic006G146400--Sobic006G103601 Sobic003G379500 Sobic003G379500 Sobic006G146400--Sobic003G379500 Sobic006G280900--Sobic006G146400 Sobic006G280900--Sobic006G222650 Sobic006G280900--Sobic004G302400 Sobic006G280900--Sobic001G537600 Sobic009G083100 Sobic009G083100 Sobic006G280900--Sobic009G083100 Sobic006G280900--Sobic009G238200 Sobic006G280900--Sobic002G116300 Sobic010G106400 Sobic010G106400 Sobic006G280900--Sobic010G106400 Sobic006G280900--Sobic010G035300 Sobic006G222650--Sobic004G302400 Sobic006G222650--Sobic010G035300 Sobic006G222650--Sobic002G116300 Sobic006G222650--Sobic006G146400 Sobic004G269500 Sobic004G269500 Sobic006G222650--Sobic004G269500 Sobic006G222650--Sobic006G280900 Sobic004G302550 Sobic004G302550 Sobic006G222650--Sobic004G302550 Sobic006G162300 Sobic006G162300 Sobic006G222650--Sobic006G162300 Sobic002G065300 Sobic002G065300 Sobic006G222650--Sobic002G065300 Sobic002G116300--Sobic010G035300 Sobic002G116300--Sobic004G302400 Sobic002G116300--Sobic006G222650 Sobic002G116300--Sobic009G238200 Sobic002G116300--Sobic006G146400 Sobic008G119000 Sobic008G119000 Sobic002G116300--Sobic008G119000 Sobic006G222800 Sobic006G222800 Sobic002G116300--Sobic006G222800 Sobic002G247100 Sobic002G247100 Sobic002G116300--Sobic002G247100 Sobic009G174600 Sobic009G174600 Sobic002G116300--Sobic009G174600 Sobic009G238200--Sobic002G116300 Sobic001G115900 Sobic001G115900 Sobic009G238200--Sobic001G115900 Sobic003G167825 Sobic003G167825 Sobic009G238200--Sobic003G167825 Sobic009G238200--Sobic006G103601 Sobic006G069050 Sobic006G069050 Sobic009G238200--Sobic006G069050 Sobic009G258150 Sobic009G258150 Sobic009G238200--Sobic009G258150 Sobic009G238200--Sobic006G146400 Sobic009G085600 Sobic009G085600 Sobic009G238200--Sobic009G085600 Sobic003G126400 Sobic003G126400 Sobic009G238200--Sobic003G126400 Sobic001G537600--Sobic010G106400 Sobic001G068901 Sobic001G068901 Sobic001G537600--Sobic001G068901 Sobic001G537600--Sobic006G146400 Sobic001G537600--Sobic009G238200 Sobic001G537600--Sobic006G280900 Sobic006G065200 Sobic006G065200 Sobic001G537600--Sobic006G065200 Sobic010G257300 Sobic010G257300 Sobic001G537600--Sobic010G257300 Sobic004G012100 Sobic004G012100 Sobic001G537600--Sobic004G012100 Sobic001G537600--Sobic006G103601 Sobic004G302400--Sobic006G222650 Sobic004G302400--Sobic009G174600 Sobic004G302400--Sobic010G035300 Sobic004G302400--Sobic002G116300 Sobic004G302400--Sobic006G162300 Sobic004G302400--Sobic002G065300 Sobic004G302400--Sobic009G238200 Sobic004G302400--Sobic006G146400 Sobic004G302400--Sobic006G280900 Sobic010G035300--Sobic006G222650 Sobic010G035300--Sobic002G116300 Sobic010G035300--Sobic004G302400 Sobic010G035300--Sobic006G162300 Sobic010G035300--Sobic006G222800 Sobic007G161450 Sobic007G161450 Sobic010G035300--Sobic007G161450 Sobic004G001900 Sobic004G001900 Sobic010G035300--Sobic004G001900 Sobic005G091400 Sobic005G091400 Sobic010G035300--Sobic005G091400 Sobic010G035300--Sobic004G269500 Sobic006G103601--Sobic009G238200 Sobic002G285800 Sobic002G285800 Sobic006G103601--Sobic002G285800 Sobic006G103601--Sobic010G106400 Sobic006G103601--Sobic002G116300 Sobic006G103601--Sobic006G146400 Sobic006G103601--Sobic009G174600 Sobic006G103601--Sobic001G537600 Sobic006G103601--Sobic003G379500 Sobic006G103601--Sobic009G258150 Sobic003G379500--Sobic001G115900 Sobic003G379500--Sobic009G258150 Sobic010G244701 Sobic010G244701 Sobic003G379500--Sobic010G244701 Sobic003G379500--Sobic003G126400 Sobic003G379500--Sobic009G238200 Sobic003G379500--Sobic003G167825 Sobic003G038300 Sobic003G038300 Sobic003G379500--Sobic003G038300 Sobic003G379500--Sobic006G103601 Sobic003G379500--Sobic006G146400
Octagon: transcription factors


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