Gene annotation
Transcriptome id Sobic.009G198400.1
Synonym PERK1, ATPERK1
Functional annotation protein kinase domain containing protein, expressed
UniProt A0A1B6P9H8
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF79
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology K04730; interleukin-1 receptor-associated kinase 1
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G24550 : proline extensin-like receptor kinase 1
RAP-DB (Rice) LOC_Os01g54700.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a044231 , Zm00025a027598
Brachypodium PNT72865 , KQK09745 , KQK12952 , KQK12953 , KQK12954 , KQK12955
Barley HORVU0Hr1G013830.3 , HORVU0Hr1G013830.2 , HORVU0Hr1G013830.1 , HORVU0Hr1G013830.7 , HORVU0Hr1G013830.6 , HORVU0Hr1G013830.5 , HORVU0Hr1G013830.4 , HORVU0Hr1G013830.8 , HORVU1Hr1G076570.4 , HORVU1Hr1G076570.2
Wheat TraesCS1B02G350100 , TraesCS1D02G339600 , TraesCS5A02G411300 , TraesCS5B02G415000 , TraesCS5B02G415000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G175701 - -
2 Sobic.001G130900 expressed protein -
3 Sobic.007G093400 - -
4 Sobic.003G367401 - -
5 Sobic.001G213400 HD domain containing protein 2, putative, expressed K06950: uncharacterized protein
6 Sobic.003G065001 - -
7 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
8 Sobic.003G120400 expressed protein -
9 Sobic.003G126400 expressed protein -
10 Sobic.007G122300 - -
11 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
12 Sobic.009G225300 - -
13 Sobic.003G200501 - K11252: histone H2B
14 Sobic.010G201000 - -
15 Sobic.001G525000 polygalacturonase, putative, expressed -
16 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
17 Sobic.002G284901 - -
18 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
20 Sobic.003G067300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic009G198400 Sobic009G198400 Sobic007G175701 Sobic007G175701 Sobic009G198400--Sobic007G175701 Sobic001G130900 Sobic001G130900 Sobic009G198400--Sobic001G130900 Sobic007G093400 Sobic007G093400 Sobic009G198400--Sobic007G093400 Sobic003G367401 Sobic003G367401 Sobic009G198400--Sobic003G367401 Sobic001G213400 Sobic001G213400 Sobic009G198400--Sobic001G213400 Sobic003G065001 Sobic003G065001 Sobic009G198400--Sobic003G065001 Sobic001G115900 Sobic001G115900 Sobic009G198400--Sobic001G115900 Sobic003G120400 Sobic003G120400 Sobic009G198400--Sobic003G120400 Sobic003G126400 Sobic003G126400 Sobic009G198400--Sobic003G126400 Sobic007G175701--Sobic001G130900 Sobic007G175701--Sobic001G213400 Sobic007G175701--Sobic007G093400 Sobic007G122300 Sobic007G122300 Sobic007G175701--Sobic007G122300 Sobic007G175701--Sobic003G367401 Sobic007G175701--Sobic003G120400 Sobic010G201000 Sobic010G201000 Sobic007G175701--Sobic010G201000 Sobic001G525000 Sobic001G525000 Sobic007G175701--Sobic001G525000 Sobic007G175701--Sobic009G198400 Sobic001G130900--Sobic003G120400 Sobic001G130900--Sobic007G093400 Sobic001G130900--Sobic007G175701 Sobic001G130900--Sobic001G525000 Sobic003G200501 Sobic003G200501 Sobic001G130900--Sobic003G200501 Sobic002G320900 Sobic002G320900 Sobic001G130900--Sobic002G320900 Sobic001G130900--Sobic003G367401 Sobic002G210200 Sobic002G210200 Sobic001G130900--Sobic002G210200 Sobic001G130900--Sobic007G122300 Sobic007G093400--Sobic003G120400 Sobic007G093400--Sobic002G320900 Sobic007G093400--Sobic001G525000 Sobic007G093400--Sobic010G201000 Sobic007G093400--Sobic003G367401 Sobic007G093400--Sobic003G065001 Sobic007G093400--Sobic002G210200 Sobic007G093400--Sobic003G200501 Sobic010G074980 Sobic010G074980 Sobic007G093400--Sobic010G074980 Sobic002G430200 Sobic002G430200 Sobic003G367401--Sobic002G430200 Sobic003G367401--Sobic010G201000 Sobic003G367401--Sobic001G525000 Sobic002G387100 Sobic002G387100 Sobic003G367401--Sobic002G387100 Sobic003G367401--Sobic007G122300 Sobic003G367401--Sobic007G093400 Sobic004G239000 Sobic004G239000 Sobic003G367401--Sobic004G239000 Sobic001G016900 Sobic001G016900 Sobic003G367401--Sobic001G016900 Sobic003G367401--Sobic003G120400 Sobic001G213400--Sobic007G122300 Sobic001G213400--Sobic007G175701 Sobic001G213400--Sobic001G130900 Sobic003G368150 Sobic003G368150 Sobic001G213400--Sobic003G368150 Sobic001G213400--Sobic003G367401 Sobic001G213400--Sobic002G430200 Sobic001G213400--Sobic002G387100 Sobic008G131800 Sobic008G131800 Sobic001G213400--Sobic008G131800 Sobic001G213400--Sobic004G239000 Sobic003G065001--Sobic007G093400 Sobic003G065001--Sobic003G367401 Sobic003G065001--Sobic010G201000 Sobic003G065001--Sobic002G320900 Sobic003G065001--Sobic002G210200 Sobic003G065001--Sobic001G525000 Sobic003G065001--Sobic003G200501 Sobic003G065001--Sobic003G120400 Sobic003G065001--Sobic010G074980 Sobic001G115900--Sobic003G126400 Sobic003G379500 Sobic003G379500 Sobic001G115900--Sobic003G379500 Sobic003G038300 Sobic003G038300 Sobic001G115900--Sobic003G038300 Sobic006G069050 Sobic006G069050 Sobic001G115900--Sobic006G069050 Sobic001G115900--Sobic003G065001 Sobic009G258150 Sobic009G258150 Sobic001G115900--Sobic009G258150 Sobic003G167825 Sobic003G167825 Sobic001G115900--Sobic003G167825 Sobic009G085600 Sobic009G085600 Sobic001G115900--Sobic009G085600 Sobic001G115900--Sobic003G367401 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic002G284901 Sobic002G284901 Sobic003G120400--Sobic002G284901 Sobic003G120400--Sobic003G200501 Sobic003G120400--Sobic002G210200 Sobic003G120400--Sobic001G130900 Sobic003G120400--Sobic002G430200 Sobic003G120400--Sobic003G367401 Sobic003G126400--Sobic006G069050 Sobic003G126400--Sobic001G115900 Sobic003G126400--Sobic003G038300 Sobic003G427500 Sobic003G427500 Sobic003G126400--Sobic003G427500 Sobic003G126400--Sobic003G167825 Sobic003G126400--Sobic010G201000 Sobic003G126400--Sobic007G093400 Sobic003G126400--Sobic003G065001 Sobic004G152501 Sobic004G152501 Sobic003G126400--Sobic004G152501
Octagon: transcription factors


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