Gene annotation
Transcriptome id Sobic.006G204200.1
Synonym Sb06g027530
Functional annotation putrescine-binding periplasmic protein-related, putative, expressed
UniProt C5YF68
Pfam PF13416
Panther DB PTHR30222 PTHR30222:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31410 : putrescine-binding periplasmic protein-related
RAP-DB (Rice) LOC_Os04g51310.1 : putrescine-binding periplasmic protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a056950
Brachypodium KQJ84408
Barley HORVU2Hr1G101610.1 , HORVU2Hr1G101610.5 , HORVU2Hr1G101610.4 , HORVU2Hr1G101610.3
Wheat TraesCS2D02G434000 , TraesCS2B02G457300 , TraesCS2A02G435900
Populus -


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cDNA sequences
Sobic.006G204200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376800 EF hand family protein, putative -
2 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
3 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
4 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
5 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
6 Sobic.002G330400 pentatricopeptide, putative, expressed -
7 Sobic.008G161401 - -
8 Sobic.004G020401 - -
9 Sobic.010G248200 KID-containing protein, putative, expressed -
10 Sobic.003G060400 transcription regulator, putative, expressed -
11 Sobic.002G376900 EF hand family protein, putative -
12 Sobic.002G297800 growth regulating factor protein, putative, expressed -
13 Sobic.009G109450 - -
14 Sobic.005G130200 - -
15 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
17 Sobic.006G196000 expressed protein -
18 Sobic.007G054000 powdery mildew resistance protein PM3b, putative, expressed -
19 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.005G130100 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase


Gene co-expression network
sample Sobic006G204200 Sobic006G204200 Sobic002G376800 Sobic002G376800 Sobic006G204200--Sobic002G376800 Sobic003G057800 Sobic003G057800 Sobic006G204200--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic006G204200--Sobic001G479500 Sobic004G016500 Sobic004G016500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic008G161401 Sobic008G161401 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200 Sobic002G376900 Sobic002G376900 Sobic002G376800--Sobic002G376900 Sobic002G376800--Sobic008G161401 Sobic010G050600 Sobic010G050600 Sobic002G376800--Sobic010G050600 Sobic005G121800 Sobic005G121800 Sobic002G376800--Sobic005G121800 Sobic009G109450 Sobic009G109450 Sobic002G376800--Sobic009G109450 Sobic009G231300 Sobic009G231300 Sobic002G376800--Sobic009G231300 Sobic002G376800--Sobic003G057800 Sobic009G113600 Sobic009G113600 Sobic002G376800--Sobic009G113600 Sobic002G376800--Sobic006G204200 Sobic003G057800--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic003G057800--Sobic003G357500 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic004G212800 Sobic004G212800 Sobic003G057800--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G057800--Sobic005G130200 Sobic007G073400 Sobic007G073400 Sobic003G057800--Sobic007G073400 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic005G187200 Sobic005G187200 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G016500--Sobic004G212800 Sobic004G016500--Sobic003G057800 Sobic004G016500--Sobic001G479500 Sobic004G164600 Sobic004G164600 Sobic004G016500--Sobic004G164600 Sobic003G424100 Sobic003G424100 Sobic004G016500--Sobic003G424100 Sobic007G130100 Sobic007G130100 Sobic004G315800--Sobic007G130100 Sobic004G315800--Sobic006G204200 Sobic008G131700 Sobic008G131700 Sobic004G315800--Sobic008G131700 Sobic002G209600 Sobic002G209600 Sobic004G315800--Sobic002G209600 Sobic001G269300 Sobic001G269300 Sobic004G315800--Sobic001G269300 Sobic004G241500 Sobic004G241500 Sobic004G315800--Sobic004G241500 Sobic004G315800--Sobic004G016500 Sobic007G052900 Sobic007G052900 Sobic004G315800--Sobic007G052900 Sobic007G076700 Sobic007G076700 Sobic004G315800--Sobic007G076700 Sobic006G263700 Sobic006G263700 Sobic002G330400--Sobic006G263700 Sobic002G330400--Sobic004G016500 Sobic006G191400 Sobic006G191400 Sobic002G330400--Sobic006G191400 Sobic002G330400--Sobic001G046600 Sobic002G330400--Sobic001G543900 Sobic009G251300 Sobic009G251300 Sobic002G330400--Sobic009G251300 Sobic002G330400--Sobic005G187200 Sobic002G330400--Sobic001G479500 Sobic006G009400 Sobic006G009400 Sobic002G330400--Sobic006G009400 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic008G161401--Sobic003G057800 Sobic008G161401--Sobic003G357500 Sobic008G161401--Sobic009G156000 Sobic002G108800 Sobic002G108800 Sobic008G161401--Sobic002G108800 Sobic008G161401--Sobic001G479500 Sobic004G291800 Sobic004G291800 Sobic004G020401--Sobic004G291800 Sobic009G110366 Sobic009G110366 Sobic004G020401--Sobic009G110366 Sobic004G020401--Sobic009G109450 Sobic009G197200 Sobic009G197200 Sobic004G020401--Sobic009G197200 Sobic004G020401--Sobic003G057800 Sobic004G020401--Sobic007G130100 Sobic004G020401--Sobic001G479500 Sobic004G020401--Sobic003G357500 Sobic004G020401--Sobic008G161401 Sobic002G007250 Sobic002G007250 Sobic010G248200--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic002G253500 Sobic002G253500 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500
Octagon: transcription factors


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