Gene annotation
Transcriptome id Sobic.002G376800.1
Synonym Sb02g039430, MSS3
Functional annotation EF hand family protein, putative
UniProt A0A1B6QFL8
Pfam PF13405
Panther DB PTHR10891:SF597 PTHR10891
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G59440 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os03g27790.1 : EF hand family protein, putative
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G376800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376900 EF hand family protein, putative -
2 Sobic.008G161401 - -
3 Sobic.010G050600 - -
4 Sobic.005G121800 expressed protein -
5 Sobic.009G109450 - -
6 Sobic.009G231300 drought induced 19 protein, putative, expressed -
7 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
8 Sobic.009G113600 - -
9 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
10 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
11 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
12 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
13 Sobic.010G146200 homeobox associated leucine zipper, putative, expressed -
14 Sobic.005G130100 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
15 Sobic.010G248200 KID-containing protein, putative, expressed -
16 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.008G031350 - -
18 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
19 Sobic.004G199600 DUF581 domain containing protein, expressed -
20 Sobic.003G107800 "thylakoid lumenal 17.9 kDa protein, chloroplast"(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic002G376800 Sobic002G376800 Sobic002G376900 Sobic002G376900 Sobic002G376800--Sobic002G376900 Sobic008G161401 Sobic008G161401 Sobic002G376800--Sobic008G161401 Sobic010G050600 Sobic010G050600 Sobic002G376800--Sobic010G050600 Sobic005G121800 Sobic005G121800 Sobic002G376800--Sobic005G121800 Sobic009G109450 Sobic009G109450 Sobic002G376800--Sobic009G109450 Sobic009G231300 Sobic009G231300 Sobic002G376800--Sobic009G231300 Sobic003G057800 Sobic003G057800 Sobic002G376800--Sobic003G057800 Sobic009G113600 Sobic009G113600 Sobic002G376800--Sobic009G113600 Sobic006G204200 Sobic006G204200 Sobic002G376800--Sobic006G204200 Sobic002G376900--Sobic002G376800 Sobic002G376900--Sobic005G121800 Sobic010G146200 Sobic010G146200 Sobic002G376900--Sobic010G146200 Sobic002G376900--Sobic009G113600 Sobic002G376900--Sobic009G109450 Sobic002G376900--Sobic010G050600 Sobic002G376900--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic002G376900--Sobic005G130100 Sobic003G176100 Sobic003G176100 Sobic002G376900--Sobic003G176100 Sobic010G248200 Sobic010G248200 Sobic008G161401--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic008G161401--Sobic004G212800 Sobic007G073400 Sobic007G073400 Sobic008G161401--Sobic007G073400 Sobic005G130200 Sobic005G130200 Sobic008G161401--Sobic005G130200 Sobic008G161401--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic008G161401--Sobic003G357500 Sobic009G156000 Sobic009G156000 Sobic008G161401--Sobic009G156000 Sobic002G108800 Sobic002G108800 Sobic008G161401--Sobic002G108800 Sobic001G479500 Sobic001G479500 Sobic008G161401--Sobic001G479500 Sobic010G050600--Sobic010G146200 Sobic010G050600--Sobic009G113600 Sobic010G050600--Sobic003G176100 Sobic010G050600--Sobic005G130100 SobicK024000 SobicK024000 Sobic010G050600--SobicK024000 Sobic008G031350 Sobic008G031350 Sobic010G050600--Sobic008G031350 Sobic006G249000 Sobic006G249000 Sobic010G050600--Sobic006G249000 Sobic007G059300 Sobic007G059300 Sobic010G050600--Sobic007G059300 Sobic010G050600--Sobic002G108800 Sobic005G121800--Sobic002G376900 Sobic005G121800--Sobic009G109450 Sobic009G180200 Sobic009G180200 Sobic005G121800--Sobic009G180200 Sobic005G121800--Sobic002G376800 Sobic004G199600 Sobic004G199600 Sobic005G121800--Sobic004G199600 Sobic003G258400 Sobic003G258400 Sobic005G121800--Sobic003G258400 Sobic009G078500 Sobic009G078500 Sobic005G121800--Sobic009G078500 Sobic009G110366 Sobic009G110366 Sobic005G121800--Sobic009G110366 Sobic006G273100 Sobic006G273100 Sobic005G121800--Sobic006G273100 Sobic009G109450--Sobic009G078500 Sobic009G109450--Sobic004G199600 Sobic009G109450--Sobic009G180200 Sobic009G109450--Sobic005G130100 Sobic009G109450--Sobic009G231300 Sobic006G196000 Sobic006G196000 Sobic009G109450--Sobic006G196000 Sobic009G109450--Sobic005G121800 Sobic009G109450--Sobic002G376900 Sobic009G109450--Sobic009G110366 Sobic009G231300--Sobic005G130100 Sobic009G231300--Sobic009G180200 Sobic009G231300--Sobic009G109450 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic009G231300--Sobic003G258400 Sobic009G231300--Sobic004G199600 Sobic009G231300--Sobic010G050600 Sobic003G057800--Sobic001G479500 Sobic003G057800--Sobic003G357500 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic003G057800--Sobic004G212800 Sobic003G057800--Sobic005G130200 Sobic003G057800--Sobic007G073400 Sobic004G016500 Sobic004G016500 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600 Sobic002G062300 Sobic002G062300 Sobic009G113600--Sobic002G062300 Sobic009G113600--Sobic007G059300 Sobic009G113600--SobicK024000 Sobic009G196700 Sobic009G196700 Sobic009G113600--Sobic009G196700 Sobic008G009500 Sobic008G009500 Sobic009G113600--Sobic008G009500 Sobic008G108900 Sobic008G108900 Sobic009G113600--Sobic008G108900 Sobic003G031750 Sobic003G031750 Sobic009G113600--Sobic003G031750 Sobic009G113600--Sobic008G031350 Sobic009G113600--Sobic010G146200 Sobic006G204200--Sobic002G376800 Sobic006G204200--Sobic003G057800 Sobic006G204200--Sobic001G479500 Sobic006G204200--Sobic004G016500 Sobic004G315800 Sobic004G315800 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic006G204200--Sobic010G248200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.