Gene annotation
Transcriptome id Sobic.003G357500.5,Sobic.003G357500.2,Sobic.003G357500.3,Sobic.003G357500.1,Sobic.003G357500.4
Synonym Sb03g039960, LAC7
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
laccase precursor protein, putative, expressed
UniProt C5XPU2 , A0A1B6Q702 , A0A1W0W0F6 , A0A1W0W0I5 , A0A1W0W0G9
Pfam PF07732 PF07731 PF00394 PF07732 PF00394 PF07731 PF00394 PF07732 PF07731 PF07731 PF00394 PF07732
Panther DB PTHR11709 PTHR11709:SF92
NCBI CDD KOG1263; Multicopper oxidases
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding GO:0005507copper ion binding GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G09220 : laccase 7
RAP-DB (Rice) LOC_Os01g63180.1,LOC_Os12g15920.1 : laccase-6 precursor, putative, expressed,laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a054092 , Zm00025a022105 , Zm00025a029611 , Zm00025a039744 , Zm00025a026840 , Zm00025a023909 , Zm00025a002044 , Zm00025a027016 , Zm00025a026839
Brachypodium KQK10593 , KQK22086 , KQJ93028 , KQK10391 , PNT63129 , PNT73208 , PNT73209 , KQJ87547 , PNT73210 , PNT63130
Barley HORVU5Hr1G047480.10 , HORVU5Hr1G047480.6 , HORVU5Hr1G047480.7 , HORVU5Hr1G047480.3 , HORVU5Hr1G047480.9
Wheat TraesCS5D02G156500 , TraesCS5A02G151400 , TraesCS6A02G304900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase
2 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
3 Sobic.008G161401 - -
4 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
5 Sobic.010G248200 KID-containing protein, putative, expressed -
6 Sobic.004G212800 - -
7 Sobic.005G130200 - -
8 Sobic.006G196000 expressed protein -
9 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
10 Sobic.009G110366 - -
11 Sobic.008G105500 ureide permease, putative, expressed -
12 Sobic.004G020401 - -
13 Sobic.001G272000 - -
14 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
16 Sobic.002G007250 - -
17 Sobic.009G109450 - -
18 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
19 Sobic.008G009500 pentatricopeptide, putative, expressed -
20 Sobic.009G231300 drought induced 19 protein, putative, expressed -


Gene co-expression network
sample Sobic003G357500 Sobic003G357500 Sobic003G357600 Sobic003G357600 Sobic003G357500--Sobic003G357600 Sobic003G057800 Sobic003G057800 Sobic003G357500--Sobic003G057800 Sobic008G161401 Sobic008G161401 Sobic003G357500--Sobic008G161401 Sobic007G073400 Sobic007G073400 Sobic003G357500--Sobic007G073400 Sobic010G248200 Sobic010G248200 Sobic003G357500--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic003G357500--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G357500--Sobic005G130200 Sobic006G196000 Sobic006G196000 Sobic003G357500--Sobic006G196000 Sobic001G479500 Sobic001G479500 Sobic003G357500--Sobic001G479500 Sobic003G357600--Sobic003G357500 Sobic003G357600--Sobic003G057800 Sobic003G357600--Sobic007G073400 Sobic003G357600--Sobic010G248200 Sobic004G020401 Sobic004G020401 Sobic003G357600--Sobic004G020401 Sobic002G150766 Sobic002G150766 Sobic003G357600--Sobic002G150766 Sobic004G143700 Sobic004G143700 Sobic003G357600--Sobic004G143700 Sobic007G023700 Sobic007G023700 Sobic003G357600--Sobic007G023700 Sobic001G272000 Sobic001G272000 Sobic003G357600--Sobic001G272000 Sobic003G057800--Sobic001G479500 Sobic003G057800--Sobic003G357500 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic003G057800--Sobic004G212800 Sobic003G057800--Sobic005G130200 Sobic003G057800--Sobic007G073400 Sobic004G016500 Sobic004G016500 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic008G161401--Sobic003G057800 Sobic008G161401--Sobic003G357500 Sobic009G156000 Sobic009G156000 Sobic008G161401--Sobic009G156000 Sobic002G108800 Sobic002G108800 Sobic008G161401--Sobic002G108800 Sobic008G161401--Sobic001G479500 Sobic007G073400--Sobic004G212800 Sobic004G164600 Sobic004G164600 Sobic007G073400--Sobic004G164600 Sobic004G076732 Sobic004G076732 Sobic007G073400--Sobic004G076732 Sobic008G009500 Sobic008G009500 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic008G042250 Sobic008G042250 Sobic007G073400--Sobic008G042250 Sobic005G110430 Sobic005G110430 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700 Sobic002G007250 Sobic002G007250 Sobic010G248200--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic002G253500 Sobic002G253500 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic004G212800--Sobic007G073400 Sobic004G212800--Sobic004G164600 Sobic001G024200 Sobic001G024200 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic005G130200--Sobic010G248200 Sobic005G130200--Sobic001G479500 Sobic001G543900 Sobic001G543900 Sobic005G130200--Sobic001G543900 Sobic005G130200--Sobic008G161401 Sobic005G130200--Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic005G130200--Sobic003G057800 Sobic001G477800 Sobic001G477800 Sobic005G130200--Sobic001G477800 Sobic009G109450 Sobic009G109450 Sobic006G196000--Sobic009G109450 Sobic009G110366 Sobic009G110366 Sobic006G196000--Sobic009G110366 Sobic005G130100 Sobic005G130100 Sobic006G196000--Sobic005G130100 Sobic009G078500 Sobic009G078500 Sobic006G196000--Sobic009G078500 Sobic006G196000--Sobic003G357500 Sobic006G196000--Sobic001G479500 Sobic009G231300 Sobic009G231300 Sobic006G196000--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic006G196000--Sobic009G180200 Sobic009G198900 Sobic009G198900 Sobic006G196000--Sobic009G198900 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic001G479500--Sobic008G161401 Sobic001G479500--Sobic009G156000 Sobic001G479500--Sobic001G543900 Sobic005G187200 Sobic005G187200 Sobic001G479500--Sobic005G187200 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800
Octagon: transcription factors


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