Gene annotation
Transcriptome id Sobic.004G016500.1
Synonym Sb04g001570
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XSY7
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF598
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17033 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os02g02770.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057350 , Zm00025a018744
Brachypodium KQJ92949
Barley -
Wheat TraesCS6A02G072200 , TraesCS6B02G096900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
2 Sobic.002G150766 - -
3 Sobic.002G330400 pentatricopeptide, putative, expressed -
4 Sobic.008G167300 NBS-LRR disease resistance protein, putative, expressed -
5 Sobic.004G212800 - -
6 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
7 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
8 Sobic.004G164600 - -
9 Sobic.003G424100 sulfotransferase domain containing protein, expressed -
10 Sobic.010G146700 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
11 Sobic.008G176732 - -
12 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
13 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
14 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
15 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
16 Sobic.008G161401 - -
17 Sobic.002G007250 - -
18 Sobic.007G099500 hypothetical protein -
19 Sobic.008G157950 - -
20 Sobic.002G283300 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G016500 Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G212800 Sobic004G212800 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic004G016500--Sobic001G479500 Sobic004G164600 Sobic004G164600 Sobic004G016500--Sobic004G164600 Sobic003G424100 Sobic003G424100 Sobic004G016500--Sobic003G424100 Sobic001G046600--Sobic004G016500 Sobic001G046600--Sobic004G212800 Sobic001G046600--Sobic004G164600 Sobic007G073400 Sobic007G073400 Sobic001G046600--Sobic007G073400 Sobic001G046600--Sobic003G424100 Sobic004G112500 Sobic004G112500 Sobic001G046600--Sobic004G112500 Sobic001G046600--Sobic008G167300 Sobic008G157950 Sobic008G157950 Sobic001G046600--Sobic008G157950 Sobic008G176732 Sobic008G176732 Sobic001G046600--Sobic008G176732 Sobic002G150766--Sobic004G016500 Sobic002G150766--Sobic001G046600 Sobic010G146700 Sobic010G146700 Sobic002G150766--Sobic010G146700 Sobic001G024200 Sobic001G024200 Sobic002G150766--Sobic001G024200 Sobic004G118700 Sobic004G118700 Sobic002G150766--Sobic004G118700 Sobic003G357600 Sobic003G357600 Sobic002G150766--Sobic003G357600 Sobic002G150766--Sobic001G479500 Sobic009G214600 Sobic009G214600 Sobic002G150766--Sobic009G214600 Sobic002G150766--Sobic003G057800 Sobic006G263700 Sobic006G263700 Sobic002G330400--Sobic006G263700 Sobic002G330400--Sobic004G016500 Sobic006G191400 Sobic006G191400 Sobic002G330400--Sobic006G191400 Sobic002G330400--Sobic001G046600 Sobic001G543900 Sobic001G543900 Sobic002G330400--Sobic001G543900 Sobic009G251300 Sobic009G251300 Sobic002G330400--Sobic009G251300 Sobic005G187200 Sobic005G187200 Sobic002G330400--Sobic005G187200 Sobic002G330400--Sobic001G479500 Sobic006G009400 Sobic006G009400 Sobic002G330400--Sobic006G009400 Sobic008G167300--Sobic004G212800 Sobic008G167300--Sobic004G016500 Sobic008G167300--Sobic001G046600 Sobic008G167300--Sobic001G024200 Sobic008G161401 Sobic008G161401 Sobic008G167300--Sobic008G161401 Sobic008G167300--Sobic004G164600 Sobic008G167300--Sobic004G112500 Sobic002G007250 Sobic002G007250 Sobic008G167300--Sobic002G007250 Sobic008G167300--Sobic003G424100 Sobic004G212800--Sobic007G073400 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic001G345333 Sobic001G345333 Sobic004G212800--Sobic001G345333 Sobic004G212800--Sobic002G007250 Sobic010G248200 Sobic010G248200 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G212800--Sobic004G112500 Sobic003G057800--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic003G057800--Sobic003G357500 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic003G057800--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G057800--Sobic005G130200 Sobic003G057800--Sobic007G073400 Sobic003G057800--Sobic004G016500 Sobic003G057800--Sobic001G046600 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic004G164600--Sobic004G212800 Sobic005G110430 Sobic005G110430 Sobic004G164600--Sobic005G110430 Sobic004G164600--Sobic007G073400 Sobic008G042250 Sobic008G042250 Sobic004G164600--Sobic008G042250 Sobic004G164600--Sobic008G157950 Sobic004G164600--Sobic001G345333 Sobic004G164600--Sobic002G007250 SobicK009900 SobicK009900 Sobic004G164600--SobicK009900 Sobic004G164600--Sobic004G076732 Sobic003G424100--Sobic004G164600 Sobic003G424100--Sobic001G046600 Sobic003G424100--Sobic004G212800 Sobic004G240900 Sobic004G240900 Sobic003G424100--Sobic004G240900 Sobic003G424100--Sobic007G073400 Sobic009G059600 Sobic009G059600 Sobic003G424100--Sobic009G059600 Sobic007G099500 Sobic007G099500 Sobic003G424100--Sobic007G099500 Sobic003G424100--Sobic004G016500 Sobic008G068800 Sobic008G068800 Sobic003G424100--Sobic008G068800
Octagon: transcription factors


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