Gene annotation
Transcriptome id Sobic.004G240900.1,Sobic.004G240900.2
Synonym PIN1, SbPIN6, ATPIN1, Sb04g028170, efflux carriers pin-formed
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments" (PubMedID : 20528920)
auxin efflux carrier component, putative, expressed
UniProt C5XYV2 , A0A194YRG6
Pfam PF03547
Panther DB PTHR31752 PTHR31752:SF19
NCBI CDD -
KEGG Orthology K13947; auxin efflux carrier family protein
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G73590 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os02g50960.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a033405 , Zm00025a049447 , Zm00025a051668 , Zm00025a022017 , Zm00025a028269 , Zm00025a033214 , Zm00025a049923
Brachypodium KQK18833 , KQJ89538 , KQK08941 , KQK01960
Barley HORVU7Hr1G038700.9 , HORVU7Hr1G038700.8 , HORVU7Hr1G038700.1 , HORVU7Hr1G038700.3 , HORVU7Hr1G038700.2 , HORVU7Hr1G038700.5 , HORVU7Hr1G038700.4 , HORVU7Hr1G038700.7 , HORVU7Hr1G038700.6 , HORVU4Hr1G026680.14 , HORVU4Hr1G026680.12 , HORVU4Hr1G026680.13 , HORVU4Hr1G026680.10 , HORVU4Hr1G026680.11 , HORVU3Hr1G057630.29 , HORVU3Hr1G057630.28 , HORVU3Hr1G111420.1 , HORVU7Hr1G110470.10 , HORVU7Hr1G110470.11 , HORVU7Hr1G038700.20 , HORVU7Hr1G038700.21 , HORVU7Hr1G038700.22 , HORVU7Hr1G038700.23 , HORVU7Hr1G038700.24 , HORVU4Hr1G026680.4 , HORVU4Hr1G026680.5 , HORVU4Hr1G026680.6 , HORVU4Hr1G026680.7 , HORVU4Hr1G026680.1 , HORVU4Hr1G026680.2 , HORVU4Hr1G026680.3 , HORVU4Hr1G026680.8 , HORVU4Hr1G026680.9 , HORVU6Hr1G076110.7 , HORVU7Hr1G038700.19 , HORVU7Hr1G038700.18 , HORVU7Hr1G038700.15 , HORVU7Hr1G038700.14 , HORVU7Hr1G038700.17 , HORVU7Hr1G038700.16 , HORVU7Hr1G038700.10 , HORVU7Hr1G038700.13 , HORVU7Hr1G038700.12 , HORVU6Hr1G076110.9 , HORVU3Hr1G057630.14 , HORVU3Hr1G057630.15 , HORVU3Hr1G057630.16 , HORVU1Hr1G091030.7 , HORVU3Hr1G057630.10 , HORVU3Hr1G057630.11 , HORVU3Hr1G057630.12 , HORVU3Hr1G057630.13 , HORVU3Hr1G057630.18 , HORVU3Hr1G057630.19 , HORVU7Hr1G110470.8 , HORVU7Hr1G110470.9 , HORVU7Hr1G110470.1 , HORVU7Hr1G110470.6 , HORVU7Hr1G110470.7 , HORVU7Hr1G110470.4 , HORVU7Hr1G110470.5 , HORVU6Hr1G076110.13 , HORVU6Hr1G076110.12 , HORVU6Hr1G076110.11 , HORVU6Hr1G076110.10 , HORVU6Hr1G076110.17 , HORVU6Hr1G076110.16 , HORVU6Hr1G076110.15 , HORVU6Hr1G076110.14 , HORVU3Hr1G057630.21 , HORVU3Hr1G057630.20 , HORVU3Hr1G057630.23 , HORVU3Hr1G057630.22 , HORVU3Hr1G057630.25 , HORVU3Hr1G057630.24 , HORVU3Hr1G057630.27 , HORVU3Hr1G057630.26 , HORVU3Hr1G057630.17 , HORVU3Hr1G057630.32 , HORVU3Hr1G057630.30 , HORVU3Hr1G057630.31 , HORVU6Hr1G076110.3 , HORVU6Hr1G076110.2 , HORVU6Hr1G076110.1 , HORVU1Hr1G091030.8 , HORVU6Hr1G076110.6 , HORVU6Hr1G076110.5 , HORVU6Hr1G076110.4 , HORVU1Hr1G091030.4 , HORVU1Hr1G091030.5 , HORVU1Hr1G091030.6 , HORVU6Hr1G076110.8 , HORVU1Hr1G091030.1 , HORVU1Hr1G091030.2 , HORVU1Hr1G091030.3 , HORVU3Hr1G057630.8 , HORVU3Hr1G057630.9 , HORVU3Hr1G057630.6 , HORVU3Hr1G057630.7 , HORVU3Hr1G057630.4 , HORVU3Hr1G057630.5 , HORVU3Hr1G057630.2 , HORVU3Hr1G057630.3 , HORVU3Hr1G057630.1
Wheat TraesCS4A02G188100 , TraesCS4D02G125300 , TraesCS3D02G221900 , TraesCS4B02G130100 , TraesCS6A02G308600 , TraesCS1D02G422900 , TraesCS3A02G231500 , TraesCS6B02G337300 , TraesCS1A02G415400 , TraesCS1B02G445400 , TraesCS7B02G095500 , TraesCS6B02G337300 , TraesCS7A02G492400 , TraesCS7A02G190600 , TraesCS6B02G337300 , TraesCS6B02G337300 , TraesCS6D02G287800 , TraesCS7B02G398100 , TraesCS7D02G191600 , TraesCS3B02G260700 , TraesCS3B02G260700 , TraesCS7D02G478800 , TraesCS7D02G478800
Populus -


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cDNA sequences
Sobic.004G240900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G424100 sulfotransferase domain containing protein, expressed -
2 Sobic.006G133600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
3 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
4 Sobic.007G099500 hypothetical protein -
5 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
6 Sobic.009G059600 KIP1, putative, expressed -
7 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
8 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
9 Sobic.004G164600 - -
10 Sobic.002G430500 phospholipase C, putative, expressed K05857: phosphatidylinositol phospholipase C, delta
11 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
12 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.004G118700 cbxX, chromosomal, putative, expressed -
14 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
15 Sobic.004G212800 - -
16 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
17 Sobic.002G150766 - -
18 Sobic.002G090400 polygalacturonase, putative, expressed -
19 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
20 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic004G240900 Sobic004G240900 Sobic003G424100 Sobic003G424100 Sobic004G240900--Sobic003G424100 Sobic006G133600 Sobic006G133600 Sobic004G240900--Sobic006G133600 Sobic001G046600 Sobic001G046600 Sobic004G240900--Sobic001G046600 Sobic007G099500 Sobic007G099500 Sobic004G240900--Sobic007G099500 Sobic004G016500 Sobic004G016500 Sobic004G240900--Sobic004G016500 Sobic009G059600 Sobic009G059600 Sobic004G240900--Sobic009G059600 Sobic003G029300 Sobic003G029300 Sobic004G240900--Sobic003G029300 Sobic004G193800 Sobic004G193800 Sobic004G240900--Sobic004G193800 Sobic004G164600 Sobic004G164600 Sobic004G240900--Sobic004G164600 Sobic003G424100--Sobic004G164600 Sobic003G424100--Sobic001G046600 Sobic004G212800 Sobic004G212800 Sobic003G424100--Sobic004G212800 Sobic003G424100--Sobic004G240900 Sobic007G073400 Sobic007G073400 Sobic003G424100--Sobic007G073400 Sobic003G424100--Sobic009G059600 Sobic003G424100--Sobic007G099500 Sobic003G424100--Sobic004G016500 Sobic008G068800 Sobic008G068800 Sobic003G424100--Sobic008G068800 Sobic006G133600--Sobic004G240900 Sobic006G262600 Sobic006G262600 Sobic006G133600--Sobic006G262600 Sobic006G213100 Sobic006G213100 Sobic006G133600--Sobic006G213100 Sobic003G044900 Sobic003G044900 Sobic006G133600--Sobic003G044900 Sobic009G214600 Sobic009G214600 Sobic006G133600--Sobic009G214600 Sobic006G133600--Sobic007G099500 Sobic001G024200 Sobic001G024200 Sobic006G133600--Sobic001G024200 Sobic006G133600--Sobic009G059600 Sobic002G221700 Sobic002G221700 Sobic006G133600--Sobic002G221700 Sobic001G046600--Sobic004G016500 Sobic001G046600--Sobic004G212800 Sobic001G046600--Sobic004G164600 Sobic001G046600--Sobic007G073400 Sobic001G046600--Sobic003G424100 Sobic004G112500 Sobic004G112500 Sobic001G046600--Sobic004G112500 Sobic008G167300 Sobic008G167300 Sobic001G046600--Sobic008G167300 Sobic008G157950 Sobic008G157950 Sobic001G046600--Sobic008G157950 Sobic008G176732 Sobic008G176732 Sobic001G046600--Sobic008G176732 Sobic007G099500--Sobic009G059600 Sobic007G099500--Sobic004G164600 Sobic002G090400 Sobic002G090400 Sobic007G099500--Sobic002G090400 Sobic007G099500--Sobic007G073400 Sobic007G099500--Sobic003G424100 Sobic007G099500--Sobic004G240900 Sobic008G031350 Sobic008G031350 Sobic007G099500--Sobic008G031350 Sobic007G099500--Sobic004G212800 Sobic007G099500--Sobic002G221700 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic004G016500--Sobic008G167300 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic004G016500--Sobic001G479500 Sobic004G016500--Sobic004G164600 Sobic004G016500--Sobic003G424100 Sobic009G059600--Sobic004G164600 Sobic009G059600--Sobic007G099500 Sobic009G059600--Sobic004G212800 Sobic009G059600--Sobic007G073400 Sobic009G059600--Sobic008G068800 Sobic003G128600 Sobic003G128600 Sobic009G059600--Sobic003G128600 Sobic009G059600--Sobic003G424100 Sobic007G142050 Sobic007G142050 Sobic009G059600--Sobic007G142050 Sobic004G076732 Sobic004G076732 Sobic009G059600--Sobic004G076732 Sobic007G154800 Sobic007G154800 Sobic003G029300--Sobic007G154800 Sobic007G123200 Sobic007G123200 Sobic003G029300--Sobic007G123200 Sobic009G102800 Sobic009G102800 Sobic003G029300--Sobic009G102800 Sobic003G029300--Sobic004G240900 Sobic003G029300--Sobic004G193800 Sobic004G151900 Sobic004G151900 Sobic003G029300--Sobic004G151900 Sobic006G062400 Sobic006G062400 Sobic003G029300--Sobic006G062400 Sobic003G029300--Sobic004G016500 Sobic003G029300--Sobic001G046600 Sobic003G185250 Sobic003G185250 Sobic004G193800--Sobic003G185250 Sobic004G193800--Sobic004G016500 Sobic004G193800--Sobic003G424100 Sobic004G193800--Sobic008G068800 Sobic004G193800--Sobic007G099500 Sobic003G023400 Sobic003G023400 Sobic004G193800--Sobic003G023400 Sobic004G193800--Sobic004G240900 Sobic010G208500 Sobic010G208500 Sobic004G193800--Sobic010G208500 Sobic004G169501 Sobic004G169501 Sobic004G193800--Sobic004G169501 Sobic004G164600--Sobic004G212800 Sobic005G110430 Sobic005G110430 Sobic004G164600--Sobic005G110430 Sobic004G164600--Sobic007G073400 Sobic008G042250 Sobic008G042250 Sobic004G164600--Sobic008G042250 Sobic004G164600--Sobic008G157950 Sobic001G345333 Sobic001G345333 Sobic004G164600--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G164600--Sobic002G007250 SobicK009900 SobicK009900 Sobic004G164600--SobicK009900 Sobic004G164600--Sobic004G076732
Octagon: transcription factors


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