Gene annotation
Transcriptome id Sobic.004G118700.1
Synonym Sb04g009900
Functional annotation cbxX, chromosomal, putative, expressed
UniProt C5XZK8
Pfam PF00004 PF12796
Panther DB PTHR24193 PTHR24193:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G24530 : AAA-type ATPase family protein / ankyrin repeat family protein
RAP-DB (Rice) LOC_Os02g16660.1 : cbxX, chromosomal, putative, expressed
MaizeGDB (Corn) Zm00025a034405
Brachypodium KQJ94325 , PNT66307
Barley HORVU6Hr1G043280.3 , HORVU6Hr1G043280.2 , HORVU6Hr1G043280.1
Wheat TraesCS6B02G218300 , TraesCS6D02G179400 , TraesCS6A02G193400
Populus -


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cDNA sequences
Sobic.004G118700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
2 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
3 Sobic.004G212800 - -
4 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
5 Sobic.002G283300 protein kinase family protein, putative, expressed -
6 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
7 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
9 Sobic.003G424100 sulfotransferase domain containing protein, expressed -
10 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
11 Sobic.003G223700 hydroquinone glucosyltransferase, putative, expressed K08237: hydroquinone glucosyltransferase
12 Sobic.002G150766 - -
13 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.K009900 autophagy-related protein 8D, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
15 Sobic.007G142050 - -
16 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
17 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
18 Sobic.008G167300 NBS-LRR disease resistance protein, putative, expressed -
19 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
20 Sobic.004G164600 - -


Gene co-expression network
sample Sobic004G118700 Sobic004G118700 Sobic001G024200 Sobic001G024200 Sobic004G118700--Sobic001G024200 Sobic008G068800 Sobic008G068800 Sobic004G118700--Sobic008G068800 Sobic004G212800 Sobic004G212800 Sobic004G118700--Sobic004G212800 Sobic010G074500 Sobic010G074500 Sobic004G118700--Sobic010G074500 Sobic002G283300 Sobic002G283300 Sobic004G118700--Sobic002G283300 Sobic003G044900 Sobic003G044900 Sobic004G118700--Sobic003G044900 Sobic004G016500 Sobic004G016500 Sobic004G118700--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic004G118700--Sobic001G046600 Sobic003G424100 Sobic003G424100 Sobic004G118700--Sobic003G424100 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic004G112500 Sobic004G112500 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic004G164600 Sobic004G164600 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic010G248200 Sobic010G248200 Sobic001G024200--Sobic010G248200 Sobic007G116400 Sobic007G116400 Sobic008G068800--Sobic007G116400 Sobic007G142050 Sobic007G142050 Sobic008G068800--Sobic007G142050 Sobic008G068800--Sobic003G204000 Sobic004G169501 Sobic004G169501 Sobic008G068800--Sobic004G169501 Sobic009G059600 Sobic009G059600 Sobic008G068800--Sobic009G059600 Sobic003G315332 Sobic003G315332 Sobic008G068800--Sobic003G315332 Sobic004G286900 Sobic004G286900 Sobic008G068800--Sobic004G286900 Sobic008G068800--Sobic003G424100 Sobic008G068800--Sobic001G024200 Sobic007G073400 Sobic007G073400 Sobic004G212800--Sobic007G073400 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic001G345333 Sobic001G345333 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic008G161401 Sobic008G161401 Sobic004G212800--Sobic008G161401 Sobic004G212800--Sobic004G112500 Sobic010G263800 Sobic010G263800 Sobic010G074500--Sobic010G263800 Sobic006G009400 Sobic006G009400 Sobic010G074500--Sobic006G009400 Sobic007G094801 Sobic007G094801 Sobic010G074500--Sobic007G094801 Sobic007G011400 Sobic007G011400 Sobic010G074500--Sobic007G011400 Sobic010G074500--Sobic002G283300 Sobic005G141801 Sobic005G141801 Sobic010G074500--Sobic005G141801 Sobic009G156000 Sobic009G156000 Sobic010G074500--Sobic009G156000 Sobic004G143700 Sobic004G143700 Sobic010G074500--Sobic004G143700 Sobic007G205800 Sobic007G205800 Sobic010G074500--Sobic007G205800 Sobic002G283300--Sobic009G156000 Sobic002G283300--Sobic010G263800 Sobic002G283300--Sobic004G212800 Sobic002G283300--Sobic004G143700 Sobic002G283300--Sobic006G009400 SobicK016900 SobicK016900 Sobic002G283300--SobicK016900 Sobic001G287301 Sobic001G287301 Sobic002G283300--Sobic001G287301 Sobic002G283300--Sobic010G248200 Sobic005G130200 Sobic005G130200 Sobic002G283300--Sobic005G130200 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic002G039500 Sobic002G039500 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic004G016500--Sobic001G479500 Sobic004G016500--Sobic004G164600 Sobic004G016500--Sobic003G424100 Sobic001G046600--Sobic004G016500 Sobic001G046600--Sobic004G212800 Sobic001G046600--Sobic004G164600 Sobic001G046600--Sobic007G073400 Sobic001G046600--Sobic003G424100 Sobic001G046600--Sobic004G112500 Sobic001G046600--Sobic008G167300 Sobic008G157950 Sobic008G157950 Sobic001G046600--Sobic008G157950 Sobic008G176732 Sobic008G176732 Sobic001G046600--Sobic008G176732 Sobic003G424100--Sobic004G164600 Sobic003G424100--Sobic001G046600 Sobic003G424100--Sobic004G212800 Sobic004G240900 Sobic004G240900 Sobic003G424100--Sobic004G240900 Sobic003G424100--Sobic007G073400 Sobic003G424100--Sobic009G059600 Sobic007G099500 Sobic007G099500 Sobic003G424100--Sobic007G099500 Sobic003G424100--Sobic004G016500 Sobic003G424100--Sobic008G068800
Octagon: transcription factors


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