Gene annotation
Transcriptome id Sobic.002G150766.5,Sobic.002G150766.6,Sobic.002G150766.7,Sobic.002G150766.2,Sobic.002G150766.1,Sobic.002G150766.8,Sobic.002G150766.9,Sobic.002G150766.3,Sobic.002G150766.4
Synonym -
Functional annotation -
UniProt A0A1W0W417
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
3 Sobic.010G146700 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
4 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
5 Sobic.004G118700 cbxX, chromosomal, putative, expressed -
6 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
8 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
9 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
10 Sobic.004G212800 - -
11 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
12 Sobic.003G223700 hydroquinone glucosyltransferase, putative, expressed K08237: hydroquinone glucosyltransferase
13 Sobic.002G330400 pentatricopeptide, putative, expressed -
14 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.008G161401 - -
16 Sobic.010G248200 KID-containing protein, putative, expressed -
17 Sobic.002G283300 protein kinase family protein, putative, expressed -
18 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.004G164600 - -
20 Sobic.004G143700 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic002G150766 Sobic002G150766 Sobic004G016500 Sobic004G016500 Sobic002G150766--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic002G150766--Sobic001G046600 Sobic010G146700 Sobic010G146700 Sobic002G150766--Sobic010G146700 Sobic001G024200 Sobic001G024200 Sobic002G150766--Sobic001G024200 Sobic004G118700 Sobic004G118700 Sobic002G150766--Sobic004G118700 Sobic003G357600 Sobic003G357600 Sobic002G150766--Sobic003G357600 Sobic001G479500 Sobic001G479500 Sobic002G150766--Sobic001G479500 Sobic009G214600 Sobic009G214600 Sobic002G150766--Sobic009G214600 Sobic003G057800 Sobic003G057800 Sobic002G150766--Sobic003G057800 Sobic004G016500--Sobic001G046600 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic008G167300 Sobic008G167300 Sobic004G016500--Sobic008G167300 Sobic004G212800 Sobic004G212800 Sobic004G016500--Sobic004G212800 Sobic004G016500--Sobic003G057800 Sobic004G016500--Sobic001G479500 Sobic004G164600 Sobic004G164600 Sobic004G016500--Sobic004G164600 Sobic003G424100 Sobic003G424100 Sobic004G016500--Sobic003G424100 Sobic001G046600--Sobic004G016500 Sobic001G046600--Sobic004G212800 Sobic001G046600--Sobic004G164600 Sobic007G073400 Sobic007G073400 Sobic001G046600--Sobic007G073400 Sobic001G046600--Sobic003G424100 Sobic004G112500 Sobic004G112500 Sobic001G046600--Sobic004G112500 Sobic001G046600--Sobic008G167300 Sobic008G157950 Sobic008G157950 Sobic001G046600--Sobic008G157950 Sobic008G176732 Sobic008G176732 Sobic001G046600--Sobic008G176732 Sobic010G146700--Sobic001G479500 Sobic010G146700--Sobic001G046600 Sobic010G146700--Sobic004G016500 Sobic005G130200 Sobic005G130200 Sobic010G146700--Sobic005G130200 Sobic010G146700--Sobic004G212800 Sobic010G146700--Sobic008G167300 Sobic010G146700--Sobic004G112500 Sobic010G248200 Sobic010G248200 Sobic010G146700--Sobic010G248200 Sobic002G283300 Sobic002G283300 Sobic010G146700--Sobic002G283300 Sobic001G024200--Sobic004G212800 Sobic007G211000 Sobic007G211000 Sobic001G024200--Sobic007G211000 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic001G024200--Sobic010G248200 Sobic004G118700--Sobic001G024200 Sobic008G068800 Sobic008G068800 Sobic004G118700--Sobic008G068800 Sobic004G118700--Sobic004G212800 Sobic010G074500 Sobic010G074500 Sobic004G118700--Sobic010G074500 Sobic004G118700--Sobic002G283300 Sobic003G044900 Sobic003G044900 Sobic004G118700--Sobic003G044900 Sobic004G118700--Sobic004G016500 Sobic004G118700--Sobic001G046600 Sobic004G118700--Sobic003G424100 Sobic003G357500 Sobic003G357500 Sobic003G357600--Sobic003G357500 Sobic003G357600--Sobic003G057800 Sobic003G357600--Sobic007G073400 Sobic003G357600--Sobic010G248200 Sobic004G020401 Sobic004G020401 Sobic003G357600--Sobic004G020401 Sobic003G357600--Sobic002G150766 Sobic004G143700 Sobic004G143700 Sobic003G357600--Sobic004G143700 Sobic007G023700 Sobic007G023700 Sobic003G357600--Sobic007G023700 Sobic003G357600--Sobic001G272000 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic005G187200 Sobic005G187200 Sobic001G479500--Sobic005G187200 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic009G214600--Sobic003G044900 Sobic007G094801 Sobic007G094801 Sobic009G214600--Sobic007G094801 SobicK016900 SobicK016900 Sobic009G214600--SobicK016900 Sobic009G214600--Sobic004G016500 Sobic004G240900 Sobic004G240900 Sobic009G214600--Sobic004G240900 Sobic006G133600 Sobic006G133600 Sobic009G214600--Sobic006G133600 Sobic006G213100 Sobic006G213100 Sobic009G214600--Sobic006G213100 Sobic009G214600--Sobic002G150766 Sobic009G214600--Sobic001G046600 Sobic003G057800--Sobic001G479500 Sobic003G057800--Sobic003G357500 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic003G057800--Sobic004G212800 Sobic003G057800--Sobic005G130200 Sobic003G057800--Sobic007G073400 Sobic003G057800--Sobic004G016500 Sobic003G057800--Sobic001G046600
Octagon: transcription factors


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