Gene annotation
| Transcriptome id | Sobic.009G214600.1 |
|---|---|
| Synonym | Sb09g027020 |
| Functional annotation | possible lysine decarboxylase domain containing protein, expressed |
| UniProt | C5YUV1 |
| Pfam | PF03641 |
| Panther DB | PTHR31223 PTHR31223:SF16 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G11950 : Putative lysine decarboxylase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g46360.1 : possible lysine decarboxylase domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a044409 |
| Brachypodium | KQK09417 , KQK09419 , KQK09418 |
| Barley | HORVU1Hr1G079570.17 , HORVU1Hr1G079570.16 , HORVU1Hr1G079570.15 , HORVU1Hr1G079570.14 , HORVU1Hr1G079570.13 , HORVU1Hr1G079570.12 , HORVU1Hr1G079570.11 , HORVU1Hr1G079570.10 , HORVU1Hr1G079570.9 , HORVU1Hr1G079570.8 , HORVU1Hr1G079570.7 , HORVU1Hr1G079570.6 , HORVU1Hr1G079570.5 , HORVU1Hr1G079570.4 , HORVU1Hr1G079570.3 , HORVU1Hr1G079570.2 , HORVU1Hr1G079570.1 |
| Wheat | TraesCS1A02G362500 , TraesCS1B02G379700 |
| Populus | - |
JBrowse
| Sobic.009G214600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G044900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 2 | Sobic.007G094801 | - | - |
| 3 | Sobic.K016900 | arginyl-tRNA--protein transferase 1, putative, expressed | - |
| 4 | Sobic.004G016500 | PPR repeat domain containing protein, putative, expressed | - |
| 5 | Sobic.004G240900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 6 | Sobic.006G133600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.006G213100 | UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed | K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase |
| 8 | Sobic.002G150766 | - | - |
| 9 | Sobic.001G046600 | cycloartenol-C-24-methyltransferase 1, putative, expressed | - |
| 10 | Sobic.004G118700 | cbxX, chromosomal, putative, expressed | - |
| 11 | Sobic.005G012000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 12 | Sobic.007G073400 | SHR5-receptor-like kinase, putative, expressed | - |
| 13 | Sobic.010G077600 | gb protein, putative, expressed | - |
| 14 | Sobic.002G039500 | expressed protein | - |
| 15 | Sobic.002G430500 | phospholipase C, putative, expressed | K05857: phosphatidylinositol phospholipase C, delta |
| 16 | Sobic.002G221700 | microtubule associated protein, putative, expressed | K16732: protein regulator of cytokinesis 1 |
| 17 | Sobic.001G056300 | BHLH transcription factor, putative, expressed | - |
| 18 | Sobic.004G143700 | protein phosphatase 2C, putative, expressed | - |
| 19 | Sobic.007G191100 | zinc finger DHHC domain-containing protein, putative, expressed | K16675: palmitoyltransferase ZDHHC9/14/18 |
| 20 | Sobic.002G108800 | auxin efflux carrier component, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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