Gene annotation
| Transcriptome id | Sobic.006G133600.1 |
|---|---|
| Synonym | Sb06g021340 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) expressed protein |
| UniProt | C5YBF9 |
| Pfam | PF03188 PF03351 |
| Panther DB | PTHR23130 PTHR23130:SF78 |
| NCBI CDD | KOG4293; Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT3G07570 : Cytochrome b561/ferric reductase transmembrane with DOMON related domain |
|---|---|
| RAP-DB (Rice) | LOC_Os04g41810.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a010834 |
| Brachypodium | KQJ83357 |
| Barley | HORVU2Hr1G085570.1 , HORVU2Hr1G085570.7 , HORVU2Hr1G085570.6 , HORVU2Hr1G085570.5 , HORVU2Hr1G085570.4 , HORVU2Hr1G085570.3 , HORVU2Hr1G085570.2 |
| Wheat | TraesCS2A02G352000 , TraesCS2D02G350200 , TraesCS2B02G370200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G240900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 2 | Sobic.006G262600 | expressed protein | - |
| 3 | Sobic.006G213100 | UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed | K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase |
| 4 | Sobic.003G044900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 5 | Sobic.009G214600 | possible lysine decarboxylase domain containing protein, expressed | - |
| 6 | Sobic.007G099500 | hypothetical protein | - |
| 7 | Sobic.001G024200 | lipase class 3 family protein, putative, expressed | - |
| 8 | Sobic.009G059600 | KIP1, putative, expressed | - |
| 9 | Sobic.002G221700 | microtubule associated protein, putative, expressed | K16732: protein regulator of cytokinesis 1 |
| 10 | Sobic.004G143700 | protein phosphatase 2C, putative, expressed | - |
| 11 | Sobic.004G212800 | - | - |
| 12 | Sobic.002G221900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 13 | Sobic.004G164600 | - | - |
| 14 | Sobic.002G076400 | structural constituent of ribosome, putative, expressed | - |
| 15 | Sobic.K016900 | arginyl-tRNA--protein transferase 1, putative, expressed | - |
| 16 | Sobic.003G380500 | expressed protein | - |
| 17 | Sobic.007G191100 | zinc finger DHHC domain-containing protein, putative, expressed | K16675: palmitoyltransferase ZDHHC9/14/18 |
| 18 | Sobic.003G204000 | expressed protein | - |
| 19 | Sobic.004G016500 | PPR repeat domain containing protein, putative, expressed | - |
| 20 | Sobic.002G007200 | plastocyanin-like domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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