Gene annotation
| Transcriptome id | Sobic.010G092100.1 |
|---|---|
| Synonym | Sb10g008030, TCP-like gene;SbTCP20;SbTCP20 |
| Functional annotation | PCF-like (ClassI) Subclade 5 TCP (PubMedID : 21444336) "TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941) "plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054) TCP-domain protein, putative, expressed |
| UniProt | C5Z727 |
| Pfam | PF03634 |
| Panther DB | PTHR31072 PTHR31072:SF30 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G47620 : TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g51280.1 : TCP-domain protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a042593 , Zm00025a022039 , Zm00025a054049 , Zm00025a025732 , Zm00025a049479 , Zm00025a033195 |
| Brachypodium | KQJ92051 , PNT76171 |
| Barley | HORVU6Hr1G075650.4 , HORVU5Hr1G035980.1 , HORVU6Hr1G075650.1 , HORVU6Hr1G075650.3 , HORVU6Hr1G075650.2 , HORVU7Hr1G038130.2 , HORVU7Hr1G038130.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G038500 | ANT1, putative, expressed | K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter) |
| 2 | Sobic.001G361900 | ATPase, putative, expressed | K08900: mitochondrial chaperone BCS1 |
| 3 | Sobic.009G010700 | expressed protein | - |
| 4 | Sobic.007G159800 | DNA binding protein, putative, expressed | - |
| 5 | Sobic.003G178700 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 6 | Sobic.002G376700 | EF hand family protein, putative | - |
| 7 | Sobic.006G204200 | putrescine-binding periplasmic protein-related, putative, expressed | - |
| 8 | Sobic.001G084600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 9 | Sobic.008G163700 | helix-loop-helix DNA-binding domain containing protein, expressed | K16189: phytochrome-interacting factor 4 |
| 10 | Sobic.004G122500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 11 | Sobic.003G163500 | Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein | K03676: grxC, GLRX, glutaredoxin 3 |
| 12 | Sobic.001G217700 | possible lysine decarboxylase domain containing protein, expressed | - |
| 13 | Sobic.001G295600 | myb-like transcription factor family protein(PubMedID : 26465154)@MYB family transcription factor, putative, expressed | - |
| 14 | Sobic.001G310800 | lectin-like receptor kinase, putative, expressed | - |
| 15 | Sobic.003G052700 | -(PubMedID : 23108465)@alliin lyase precursor, putative, expressed | K16903: L-tryptophan---pyruvate aminotransferase |
| 16 | Sobic.009G002500 | polygalacturonase inhibitor precursor, putative, expressed | - |
| 17 | Sobic.006G273000 | AT hook motif domain containing protein, expressed | - |
| 18 | Sobic.001G078900 | MYB(PubMedID : 28944535)@MYB family transcription factor, putative, expressed | - |
| 19 | Sobic.003G057800 | rho termination factor, N-terminal domain containing protein, expressed | - |
| 20 | Sobic.002G246600 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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