Gene annotation
Transcriptome id Sobic.001G361900.1
Synonym Sb01g034560, AATP1
Functional annotation ATPase, putative, expressed
UniProt C5WYR8
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF28
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology K08900; mitochondrial chaperone BCS1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G40010 : AAA-ATPase 1
RAP-DB (Rice) LOC_Os03g58790.1 : ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a016039 , Zm00025a052319 , Zm00025a045292 , Zm00025a004881
Brachypodium KQJ98547 , KQK20476
Barley HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5
Wheat TraesCS3D02G350900
Populus -


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cDNA sequences
Sobic.001G361900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G092100 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
2 Sobic.001G038500 ANT1, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
3 Sobic.007G159800 DNA binding protein, putative, expressed -
4 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
5 Sobic.002G104000 - -
6 Sobic.008G163700 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
7 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
8 Sobic.005G036700 expressed protein -
9 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
10 Sobic.003G060400 transcription regulator, putative, expressed -
11 Sobic.006G004000 - -
12 Sobic.004G033900 expressed protein -
13 Sobic.001G310800 lectin-like receptor kinase, putative, expressed -
14 Sobic.009G014400 expressed protein -
15 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -
16 Sobic.003G110700 nuclear transport factor, putative, expressed -
17 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
18 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
19 Sobic.001G084600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.007G017400 APOBEC1 complementation factor, putative, expressed K13161: heterogeneous nuclear ribonucleoprotein R


Gene co-expression network
sample Sobic001G361900 Sobic001G361900 Sobic010G092100 Sobic010G092100 Sobic001G361900--Sobic010G092100 Sobic001G038500 Sobic001G038500 Sobic001G361900--Sobic001G038500 Sobic007G159800 Sobic007G159800 Sobic001G361900--Sobic007G159800 Sobic006G204200 Sobic006G204200 Sobic001G361900--Sobic006G204200 Sobic002G104000 Sobic002G104000 Sobic001G361900--Sobic002G104000 Sobic008G163700 Sobic008G163700 Sobic001G361900--Sobic008G163700 Sobic001G217700 Sobic001G217700 Sobic001G361900--Sobic001G217700 Sobic005G036700 Sobic005G036700 Sobic001G361900--Sobic005G036700 Sobic004G315800 Sobic004G315800 Sobic001G361900--Sobic004G315800 Sobic010G092100--Sobic001G038500 Sobic010G092100--Sobic001G361900 Sobic009G010700 Sobic009G010700 Sobic010G092100--Sobic009G010700 Sobic010G092100--Sobic007G159800 Sobic003G178700 Sobic003G178700 Sobic010G092100--Sobic003G178700 Sobic002G376700 Sobic002G376700 Sobic010G092100--Sobic002G376700 Sobic010G092100--Sobic006G204200 Sobic001G084600 Sobic001G084600 Sobic010G092100--Sobic001G084600 Sobic010G092100--Sobic008G163700 Sobic001G038500--Sobic010G092100 Sobic001G038500--Sobic007G159800 Sobic001G038500--Sobic006G204200 Sobic002G246600 Sobic002G246600 Sobic001G038500--Sobic002G246600 Sobic001G038500--Sobic001G361900 Sobic003G057800 Sobic003G057800 Sobic001G038500--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic001G038500--Sobic003G357500 Sobic003G357600 Sobic003G357600 Sobic001G038500--Sobic003G357600 Sobic001G038500--Sobic008G163700 Sobic007G159800--Sobic001G038500 Sobic002G376800 Sobic002G376800 Sobic007G159800--Sobic002G376800 Sobic007G159800--Sobic003G057800 Sobic009G230400 Sobic009G230400 Sobic007G159800--Sobic009G230400 Sobic007G159800--Sobic006G204200 Sobic008G105500 Sobic008G105500 Sobic007G159800--Sobic008G105500 Sobic001G056300 Sobic001G056300 Sobic007G159800--Sobic001G056300 Sobic007G159800--Sobic008G163700 Sobic007G159800--Sobic010G092100 Sobic006G204200--Sobic002G376800 Sobic006G204200--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic006G204200--Sobic001G479500 Sobic004G016500 Sobic004G016500 Sobic006G204200--Sobic004G016500 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic008G161401 Sobic008G161401 Sobic006G204200--Sobic008G161401 Sobic004G020401 Sobic004G020401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200 Sobic002G104000--Sobic001G217700 Sobic003G110700 Sobic003G110700 Sobic002G104000--Sobic003G110700 Sobic002G104000--Sobic004G315800 Sobic003G114100 Sobic003G114100 Sobic002G104000--Sobic003G114100 Sobic004G186200 Sobic004G186200 Sobic002G104000--Sobic004G186200 Sobic005G036100 Sobic005G036100 Sobic002G104000--Sobic005G036100 Sobic008G131700 Sobic008G131700 Sobic002G104000--Sobic008G131700 Sobic002G215000 Sobic002G215000 Sobic002G104000--Sobic002G215000 Sobic004G183300 Sobic004G183300 Sobic002G104000--Sobic004G183300 Sobic001G017900 Sobic001G017900 Sobic008G163700--Sobic001G017900 Sobic002G285300 Sobic002G285300 Sobic008G163700--Sobic002G285300 Sobic008G163700--Sobic007G159800 Sobic007G156101 Sobic007G156101 Sobic008G163700--Sobic007G156101 Sobic008G163700--Sobic001G038500 Sobic009G255300 Sobic009G255300 Sobic008G163700--Sobic009G255300 Sobic008G163700--Sobic010G092100 Sobic007G017400 Sobic007G017400 Sobic008G163700--Sobic007G017400 Sobic008G163700--Sobic001G361900 Sobic006G060200 Sobic006G060200 Sobic001G217700--Sobic006G060200 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic001G217700--Sobic002G376700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic010G246600 Sobic010G246600 Sobic001G217700--Sobic010G246600 Sobic007G130100 Sobic007G130100 Sobic005G036700--Sobic007G130100 Sobic009G198900 Sobic009G198900 Sobic005G036700--Sobic009G198900 Sobic004G211400 Sobic004G211400 Sobic005G036700--Sobic004G211400 Sobic004G113800 Sobic004G113800 Sobic005G036700--Sobic004G113800 Sobic003G324000 Sobic003G324000 Sobic005G036700--Sobic003G324000 Sobic004G291800 Sobic004G291800 Sobic005G036700--Sobic004G291800 Sobic004G122500 Sobic004G122500 Sobic005G036700--Sobic004G122500 Sobic001G377000 Sobic001G377000 Sobic005G036700--Sobic001G377000 Sobic005G036700--Sobic004G020401 Sobic004G315800--Sobic007G130100 Sobic004G315800--Sobic006G204200 Sobic004G315800--Sobic008G131700 Sobic002G209600 Sobic002G209600 Sobic004G315800--Sobic002G209600 Sobic004G315800--Sobic001G269300 Sobic004G241500 Sobic004G241500 Sobic004G315800--Sobic004G241500 Sobic004G315800--Sobic004G016500 Sobic007G052900 Sobic007G052900 Sobic004G315800--Sobic007G052900 Sobic007G076700 Sobic007G076700 Sobic004G315800--Sobic007G076700
Octagon: transcription factors


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