Gene annotation
Transcriptome id Sobic.001G381900.3,Sobic.001G381900.4,Sobic.001G381900.2,Sobic.001G381900.1
Synonym Sb01g036220
Functional annotation PRC-barrel domain protein, putative, expressed
UniProt A0A1Z5S9S1 , A0A1B6QNE2
Pfam -
Panther DB PTHR36740
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38570 : -
RAP-DB (Rice) LOC_Os03g21630.1 : PRC-barrel domain protein, putative, expressed
MaizeGDB (Corn) Zm00025a052433
Brachypodium PNT77465 , KQK21813
Barley HORVU4Hr1G050580.10 , HORVU4Hr1G050580.2 , HORVU4Hr1G050580.3 , HORVU4Hr1G050580.1 , HORVU4Hr1G050580.6 , HORVU4Hr1G050580.7 , HORVU4Hr1G050580.4 , HORVU4Hr1G050580.5 , HORVU4Hr1G050580.8 , HORVU4Hr1G050580.9
Wheat TraesCS4B02G170600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G204500 expressed protein -
2 Sobic.004G123600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed K18213: proteinaceous RNase P
3 Sobic.003G211500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.010G268100 pseudouridine synthase family protein, putative, expressed K15452: mitochondrial tRNA pseudouridine27/28 synthase
5 Sobic.004G119500 peptidase, putative, expressed K03100: signal peptidase I
6 Sobic.004G123300 oxidoreductase/ transition metal ion binding protein, putative, expressed -
7 Sobic.006G248700 AAA-type ATPase family protein, putative, expressed -
8 Sobic.003G132300 MYB family transcription factor, putative, expressed -
9 Sobic.009G237800 expressed protein -
10 Sobic.003G264700 expressed protein -
11 Sobic.006G229300 receptor-like kinase, putative, expressed -
12 Sobic.004G132400 lectin-like receptor kinase, putative, expressed -
13 Sobic.004G023400 expressed protein -
14 Sobic.004G276500 expressed protein K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
15 Sobic.003G110700 nuclear transport factor, putative, expressed -
16 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
17 Sobic.003G396300 PPR repeat containing protein, expressed -
18 Sobic.004G183300 expressed protein -
19 Sobic.003G305000 Unnamed(PubMedID : 24676859)@CIN-like (ClassII) Subclade 9 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
20 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein


Gene co-expression network
sample Sobic001G381900 Sobic001G381900 Sobic004G204500 Sobic004G204500 Sobic001G381900--Sobic004G204500 Sobic004G123600 Sobic004G123600 Sobic001G381900--Sobic004G123600 Sobic003G211500 Sobic003G211500 Sobic001G381900--Sobic003G211500 Sobic010G268100 Sobic010G268100 Sobic001G381900--Sobic010G268100 Sobic004G119500 Sobic004G119500 Sobic001G381900--Sobic004G119500 Sobic004G123300 Sobic004G123300 Sobic001G381900--Sobic004G123300 Sobic006G248700 Sobic006G248700 Sobic001G381900--Sobic006G248700 Sobic003G132300 Sobic003G132300 Sobic001G381900--Sobic003G132300 Sobic009G237800 Sobic009G237800 Sobic001G381900--Sobic009G237800 Sobic004G204500--Sobic001G381900 Sobic004G023400 Sobic004G023400 Sobic004G204500--Sobic004G023400 Sobic010G208000 Sobic010G208000 Sobic004G204500--Sobic010G208000 Sobic003G264700 Sobic003G264700 Sobic004G204500--Sobic003G264700 Sobic004G204500--Sobic003G211500 Sobic004G204500--Sobic009G237800 Sobic004G204500--Sobic003G132300 Sobic006G229300 Sobic006G229300 Sobic004G204500--Sobic006G229300 Sobic005G128100 Sobic005G128100 Sobic004G204500--Sobic005G128100 Sobic004G123600--Sobic001G381900 Sobic009G157000 Sobic009G157000 Sobic004G123600--Sobic009G157000 Sobic006G111500 Sobic006G111500 Sobic004G123600--Sobic006G111500 Sobic004G123600--Sobic006G248700 Sobic004G123600--Sobic003G211500 Sobic004G123600--Sobic003G132300 Sobic004G123600--Sobic004G123300 Sobic006G122900 Sobic006G122900 Sobic004G123600--Sobic006G122900 Sobic004G132400 Sobic004G132400 Sobic004G123600--Sobic004G132400 Sobic007G132000 Sobic007G132000 Sobic003G211500--Sobic007G132000 Sobic003G211500--Sobic003G132300 Sobic003G211500--Sobic001G381900 Sobic003G211500--Sobic004G132400 Sobic003G211500--Sobic004G204500 Sobic003G211500--Sobic006G229300 Sobic003G211500--Sobic004G119500 Sobic003G211500--Sobic004G023400 Sobic001G147400 Sobic001G147400 Sobic003G211500--Sobic001G147400 Sobic010G268100--Sobic001G381900 Sobic010G268100--Sobic004G204500 Sobic010G268100--Sobic004G023400 Sobic010G268100--Sobic009G237800 Sobic010G268100--Sobic010G208000 Sobic010G008700 Sobic010G008700 Sobic010G268100--Sobic010G008700 Sobic003G019000 Sobic003G019000 Sobic010G268100--Sobic003G019000 Sobic007G123600 Sobic007G123600 Sobic010G268100--Sobic007G123600 Sobic009G255300 Sobic009G255300 Sobic010G268100--Sobic009G255300 Sobic006G107600 Sobic006G107600 Sobic004G119500--Sobic006G107600 Sobic002G305700 Sobic002G305700 Sobic004G119500--Sobic002G305700 Sobic003G254600 Sobic003G254600 Sobic004G119500--Sobic003G254600 Sobic004G119500--Sobic007G123600 Sobic001G281500 Sobic001G281500 Sobic004G119500--Sobic001G281500 Sobic002G200200 Sobic002G200200 Sobic004G119500--Sobic002G200200 Sobic009G212000 Sobic009G212000 Sobic004G119500--Sobic009G212000 Sobic003G256200 Sobic003G256200 Sobic004G119500--Sobic003G256200 Sobic007G171800 Sobic007G171800 Sobic004G119500--Sobic007G171800 Sobic007G027000 Sobic007G027000 Sobic004G123300--Sobic007G027000 Sobic004G123300--Sobic001G381900 Sobic004G123300--Sobic007G123600 Sobic004G123300--Sobic003G019000 Sobic004G241700 Sobic004G241700 Sobic004G123300--Sobic004G241700 Sobic004G123300--Sobic004G119500 Sobic004G123300--Sobic004G123600 Sobic003G396300 Sobic003G396300 Sobic004G123300--Sobic003G396300 Sobic009G137000 Sobic009G137000 Sobic004G123300--Sobic009G137000 Sobic006G248700--Sobic004G123600 Sobic006G248700--Sobic001G381900 Sobic001G316700 Sobic001G316700 Sobic006G248700--Sobic001G316700 Sobic003G028800 Sobic003G028800 Sobic006G248700--Sobic003G028800 Sobic008G093500 Sobic008G093500 Sobic006G248700--Sobic008G093500 Sobic006G248700--Sobic003G211500 Sobic003G037900 Sobic003G037900 Sobic006G248700--Sobic003G037900 Sobic004G310700 Sobic004G310700 Sobic006G248700--Sobic004G310700 Sobic007G062100 Sobic007G062100 Sobic006G248700--Sobic007G062100 Sobic003G132300--Sobic006G229300 Sobic003G305300 Sobic003G305300 Sobic003G132300--Sobic003G305300 Sobic003G132300--Sobic004G132400 Sobic003G132300--Sobic003G211500 Sobic004G202600 Sobic004G202600 Sobic003G132300--Sobic004G202600 Sobic003G132300--Sobic009G212000 Sobic009G179800 Sobic009G179800 Sobic003G132300--Sobic009G179800 Sobic002G215000 Sobic002G215000 Sobic003G132300--Sobic002G215000 Sobic003G132300--Sobic004G023400 Sobic002G077000 Sobic002G077000 Sobic009G237800--Sobic002G077000 Sobic009G237800--Sobic004G204500 Sobic009G237800--Sobic004G023400 Sobic007G204400 Sobic007G204400 Sobic009G237800--Sobic007G204400 Sobic009G237800--Sobic005G128100 Sobic009G237800--Sobic003G264700 Sobic001G337600 Sobic001G337600 Sobic009G237800--Sobic001G337600 Sobic004G072000 Sobic004G072000 Sobic009G237800--Sobic004G072000 Sobic010G244600 Sobic010G244600 Sobic009G237800--Sobic010G244600
Octagon: transcription factors


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