Gene annotation
Transcriptome id Sobic.003G396300.1
Synonym Sb03g043320
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1B6Q7Q9
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36240 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os01g68070.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a039399
Brachypodium KQK11119
Barley HORVU3Hr1G092330.8 , HORVU3Hr1G092330.9 , HORVU3Hr1G092330.1 , HORVU3Hr1G092330.2 , HORVU3Hr1G092330.3 , HORVU3Hr1G092330.4 , HORVU3Hr1G092330.5 , HORVU3Hr1G092330.6 , HORVU3Hr1G092330.7
Wheat TraesCSU02G238900 , TraesCS3B02G448500 , TraesCS3D02G410000
Populus -


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cDNA sequences
Sobic.003G396300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G081150 - -
2 Sobic.006G122900 expressed protein K15360: STRA13, CENPX, centromere protein X
3 Sobic.004G359200 bZIP transcription factor domain containing protein, expressed -
4 Sobic.010G098400 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
5 Sobic.004G123300 oxidoreductase/ transition metal ion binding protein, putative, expressed -
6 Sobic.001G345000 OsFBX8 - F-box domain containing protein, expressed -
7 Sobic.001G381900 PRC-barrel domain protein, putative, expressed -
8 Sobic.009G125600 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
9 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
10 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
11 Sobic.001G102300 homeobox domain containing protein, expressed -
12 Sobic.009G094800 sugar porter, putative, expressed -
13 Sobic.010G063200 zinc finger family protein, putative, expressed -
14 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
16 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
17 Sobic.006G266600 MYB_Al protein, putative, expressed -
18 Sobic.002G064750 - -
19 Sobic.001G500300 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
20 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic003G396300 Sobic003G396300 Sobic008G081150 Sobic008G081150 Sobic003G396300--Sobic008G081150 Sobic006G122900 Sobic006G122900 Sobic003G396300--Sobic006G122900 Sobic004G359200 Sobic004G359200 Sobic003G396300--Sobic004G359200 Sobic010G098400 Sobic010G098400 Sobic003G396300--Sobic010G098400 Sobic004G123300 Sobic004G123300 Sobic003G396300--Sobic004G123300 Sobic001G345000 Sobic001G345000 Sobic003G396300--Sobic001G345000 Sobic001G381900 Sobic001G381900 Sobic003G396300--Sobic001G381900 Sobic009G125600 Sobic009G125600 Sobic003G396300--Sobic009G125600 Sobic003G019000 Sobic003G019000 Sobic003G396300--Sobic003G019000 Sobic008G081150--Sobic003G396300 Sobic009G094800 Sobic009G094800 Sobic008G081150--Sobic009G094800 Sobic008G152200 Sobic008G152200 Sobic008G081150--Sobic008G152200 Sobic007G222900 Sobic007G222900 Sobic008G081150--Sobic007G222900 Sobic007G071000 Sobic007G071000 Sobic008G081150--Sobic007G071000 Sobic004G010101 Sobic004G010101 Sobic008G081150--Sobic004G010101 Sobic008G081150--Sobic006G122900 Sobic009G205600 Sobic009G205600 Sobic008G081150--Sobic009G205600 Sobic004G096300 Sobic004G096300 Sobic008G081150--Sobic004G096300 Sobic006G122900--Sobic003G396300 Sobic006G073001 Sobic006G073001 Sobic006G122900--Sobic006G073001 Sobic006G122900--Sobic008G081150 Sobic003G037900 Sobic003G037900 Sobic006G122900--Sobic003G037900 Sobic004G123600 Sobic004G123600 Sobic006G122900--Sobic004G123600 Sobic004G307700 Sobic004G307700 Sobic006G122900--Sobic004G307700 Sobic006G266600 Sobic006G266600 Sobic006G122900--Sobic006G266600 Sobic003G284500 Sobic003G284500 Sobic006G122900--Sobic003G284500 Sobic002G166500 Sobic002G166500 Sobic006G122900--Sobic002G166500 Sobic001G102300 Sobic001G102300 Sobic004G359200--Sobic001G102300 Sobic001G300201 Sobic001G300201 Sobic004G359200--Sobic001G300201 Sobic003G108600 Sobic003G108600 Sobic004G359200--Sobic003G108600 Sobic001G351400 Sobic001G351400 Sobic004G359200--Sobic001G351400 Sobic002G064750 Sobic002G064750 Sobic004G359200--Sobic002G064750 Sobic010G214000 Sobic010G214000 Sobic004G359200--Sobic010G214000 Sobic010G063200 Sobic010G063200 Sobic004G359200--Sobic010G063200 Sobic004G359200--Sobic003G396300 Sobic008G011200 Sobic008G011200 Sobic004G359200--Sobic008G011200 Sobic010G098400--Sobic003G396300 Sobic010G098400--Sobic001G345000 Sobic004G241700 Sobic004G241700 Sobic010G098400--Sobic004G241700 Sobic006G034100 Sobic006G034100 Sobic010G098400--Sobic006G034100 Sobic010G098400--Sobic007G222900 Sobic001G375300 Sobic001G375300 Sobic010G098400--Sobic001G375300 Sobic004G237700 Sobic004G237700 Sobic010G098400--Sobic004G237700 Sobic001G107900 Sobic001G107900 Sobic010G098400--Sobic001G107900 Sobic002G040800 Sobic002G040800 Sobic010G098400--Sobic002G040800 Sobic007G027000 Sobic007G027000 Sobic004G123300--Sobic007G027000 Sobic004G123300--Sobic001G381900 Sobic007G123600 Sobic007G123600 Sobic004G123300--Sobic007G123600 Sobic004G123300--Sobic003G019000 Sobic004G123300--Sobic004G241700 Sobic004G119500 Sobic004G119500 Sobic004G123300--Sobic004G119500 Sobic004G123300--Sobic004G123600 Sobic004G123300--Sobic003G396300 Sobic009G137000 Sobic009G137000 Sobic004G123300--Sobic009G137000 Sobic001G081200 Sobic001G081200 Sobic001G345000--Sobic001G081200 Sobic001G345000--Sobic009G125600 Sobic001G345000--Sobic003G396300 Sobic003G180200 Sobic003G180200 Sobic001G345000--Sobic003G180200 Sobic010G077400 Sobic010G077400 Sobic001G345000--Sobic010G077400 Sobic006G043300 Sobic006G043300 Sobic001G345000--Sobic006G043300 Sobic001G345000--Sobic010G098400 Sobic001G420400 Sobic001G420400 Sobic001G345000--Sobic001G420400 Sobic003G331300 Sobic003G331300 Sobic001G345000--Sobic003G331300 Sobic004G204500 Sobic004G204500 Sobic001G381900--Sobic004G204500 Sobic001G381900--Sobic004G123600 Sobic003G211500 Sobic003G211500 Sobic001G381900--Sobic003G211500 Sobic010G268100 Sobic010G268100 Sobic001G381900--Sobic010G268100 Sobic001G381900--Sobic004G119500 Sobic001G381900--Sobic004G123300 Sobic006G248700 Sobic006G248700 Sobic001G381900--Sobic006G248700 Sobic003G132300 Sobic003G132300 Sobic001G381900--Sobic003G132300 Sobic009G237800 Sobic009G237800 Sobic001G381900--Sobic009G237800 Sobic009G125600--Sobic001G345000 Sobic009G125600--Sobic003G396300 Sobic005G229500 Sobic005G229500 Sobic009G125600--Sobic005G229500 Sobic010G061100 Sobic010G061100 Sobic009G125600--Sobic010G061100 Sobic009G125600--Sobic006G248700 Sobic009G125600--Sobic003G037900 Sobic008G075900 Sobic008G075900 Sobic009G125600--Sobic008G075900 Sobic009G125600--Sobic003G019000 Sobic003G259901 Sobic003G259901 Sobic009G125600--Sobic003G259901 Sobic001G214800 Sobic001G214800 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic003G019000--Sobic007G123600 Sobic001G354600 Sobic001G354600 Sobic003G019000--Sobic001G354600 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500
Octagon: transcription factors


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