Gene annotation
Transcriptome id Sobic.003G019000.1
Synonym Sb03g001910
Functional annotation uncharacterized protein HI0077, putative, expressed
UniProt A0A1B6Q101
Pfam PF04305
Panther DB PTHR21496 PTHR21496:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06240 : Protein of unknown function DUF455
RAP-DB (Rice) LOC_Os01g11590.2 : uncharacterized protein HI0077, putative, expressed
MaizeGDB (Corn) Zm00025a022908
Brachypodium KQK03296
Barley -
Wheat TraesCS3B02G164000 , TraesCS3A02G140600 , TraesCS3B02G164000 , TraesCS3A02G140600 , TraesCS3A02G140600 , TraesCS3B02G164000 , TraesCS3B02G164000 , TraesCS3D02G146500 , TraesCS3D02G146500 , TraesCS3D02G146500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
2 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
3 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
4 Sobic.001G494500 kinase, pfkB family, putative, expressed -
5 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
6 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
7 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
8 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
9 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
10 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
11 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
12 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
13 Sobic.003G149300 pentatricopeptide, putative, expressed -
14 Sobic.001G540800 DNA binding protein, putative, expressed -
15 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
16 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
17 Sobic.003G168100 BZIP protein, putative, expressed -
18 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
19 Sobic.003G155300 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
20 Sobic.006G038000 expressed protein -


Gene co-expression network
sample Sobic003G019000 Sobic003G019000 Sobic001G214800 Sobic001G214800 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic007G123600 Sobic007G123600 Sobic003G019000--Sobic007G123600 Sobic001G354600 Sobic001G354600 Sobic003G019000--Sobic001G354600 Sobic001G375300 Sobic001G375300 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500 Sobic002G068100 Sobic002G068100 Sobic001G214800--Sobic002G068100 Sobic001G214800--Sobic003G019000 Sobic001G536400 Sobic001G536400 Sobic001G214800--Sobic001G536400 Sobic001G214800--Sobic001G354600 Sobic010G121500 Sobic010G121500 Sobic001G214800--Sobic010G121500 Sobic002G344000 Sobic002G344000 Sobic001G214800--Sobic002G344000 Sobic001G214800--Sobic001G375300 Sobic001G152100 Sobic001G152100 Sobic001G214800--Sobic001G152100 Sobic004G351600 Sobic004G351600 Sobic001G214800--Sobic004G351600 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic001G514100 Sobic001G514100 Sobic001G494500--Sobic001G514100 Sobic003G128400 Sobic003G128400 Sobic001G494500--Sobic003G128400 Sobic002G156100 Sobic002G156100 Sobic001G494500--Sobic002G156100 Sobic008G067100 Sobic008G067100 Sobic001G494500--Sobic008G067100 Sobic001G494500--Sobic001G375000 Sobic001G202000 Sobic001G202000 Sobic001G494500--Sobic001G202000 Sobic007G095500 Sobic007G095500 Sobic001G494500--Sobic007G095500 Sobic002G043600 Sobic002G043600 Sobic001G494500--Sobic002G043600 Sobic001G494500--Sobic004G225600 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic003G067100--Sobic002G043600 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic007G123600--Sobic002G043600 Sobic004G119500 Sobic004G119500 Sobic007G123600--Sobic004G119500 Sobic002G181000 Sobic002G181000 Sobic007G123600--Sobic002G181000 Sobic002G200200 Sobic002G200200 Sobic007G123600--Sobic002G200200 Sobic003G432500 Sobic003G432500 Sobic007G123600--Sobic003G432500 Sobic001G461700 Sobic001G461700 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic003G360400 Sobic003G360400 Sobic001G354600--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic001G354600--Sobic010G112100 Sobic001G433800 Sobic001G433800 Sobic001G354600--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic001G354600--Sobic002G068100 Sobic009G044800 Sobic009G044800 Sobic001G354600--Sobic009G044800 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G124000 Sobic001G124000 Sobic001G375300--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic001G375300--Sobic004G237100 Sobic002G277600 Sobic002G277600 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic003G241800 Sobic003G241800 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic001G022500--Sobic003G067100 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200
Octagon: transcription factors


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