Gene annotation
Transcriptome id Sobic.007G123600.1
Synonym Sb07g020060
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt C5YKT2
Pfam PF01926 PF10396 PF12631
Panther DB PTHR11649 PTHR11649:SF56
NCBI CDD KOG1191; Mitochondrial GTPase
KEGG Orthology K03650; mnmE, trmE, tRNA modification GTPase
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G78010 : tRNA modification GTPase, putative
RAP-DB (Rice) LOC_Os08g31460.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031015
Brachypodium KQJ98216
Barley HORVU7Hr1G063900.2 , HORVU7Hr1G063900.1
Wheat TraesCS5D02G041000 , TraesCS5D02G041000 , TraesCS5B02G032900 , TraesCS5B02G032900 , TraesCS5A02G032700 , TraesCS5A02G032700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
2 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
3 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
4 Sobic.004G119500 peptidase, putative, expressed K03100: signal peptidase I
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
7 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
8 Sobic.001G461700 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
9 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
10 Sobic.007G015300 calreticulin family protein, expressed -
11 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
12 Sobic.003G271900 expressed protein -
13 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
15 Sobic.006G132000 glycine-rich protein, putative, expressed -
16 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
17 Sobic.001G516901 - -
18 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
19 Sobic.002G304100 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
20 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -


Gene co-expression network
sample Sobic007G123600 Sobic007G123600 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic002G043600 Sobic002G043600 Sobic007G123600--Sobic002G043600 Sobic004G119500 Sobic004G119500 Sobic007G123600--Sobic004G119500 Sobic002G181000 Sobic002G181000 Sobic007G123600--Sobic002G181000 Sobic002G200200 Sobic002G200200 Sobic007G123600--Sobic002G200200 Sobic003G432500 Sobic003G432500 Sobic007G123600--Sobic003G432500 Sobic001G461700 Sobic001G461700 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic009G148500 Sobic009G148500 Sobic003G151500--Sobic009G148500 Sobic002G406700 Sobic002G406700 Sobic003G151500--Sobic002G406700 Sobic003G151500--Sobic003G432500 Sobic004G336200 Sobic004G336200 Sobic003G151500--Sobic004G336200 Sobic001G126300 Sobic001G126300 Sobic003G151500--Sobic001G126300 Sobic005G110400 Sobic005G110400 Sobic003G151500--Sobic005G110400 Sobic001G083100 Sobic001G083100 Sobic003G151500--Sobic001G083100 Sobic003G372900 Sobic003G372900 Sobic003G151500--Sobic003G372900 Sobic008G073100 Sobic008G073100 Sobic003G151500--Sobic008G073100 Sobic006G055800--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic006G055800--Sobic003G324700 Sobic005G002900 Sobic005G002900 Sobic006G055800--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic006G055800--Sobic005G110400 Sobic003G232700 Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic006G107600 Sobic006G107600 Sobic004G119500--Sobic006G107600 Sobic002G305700 Sobic002G305700 Sobic004G119500--Sobic002G305700 Sobic003G254600 Sobic003G254600 Sobic004G119500--Sobic003G254600 Sobic004G119500--Sobic007G123600 Sobic001G281500 Sobic001G281500 Sobic004G119500--Sobic001G281500 Sobic004G119500--Sobic002G200200 Sobic009G212000 Sobic009G212000 Sobic004G119500--Sobic009G212000 Sobic003G256200 Sobic003G256200 Sobic004G119500--Sobic003G256200 Sobic007G171800 Sobic007G171800 Sobic004G119500--Sobic007G171800 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic002G181000--Sobic009G148500 Sobic010G095200 Sobic010G095200 Sobic002G200200--Sobic010G095200 Sobic004G298100 Sobic004G298100 Sobic002G200200--Sobic004G298100 Sobic001G122400 Sobic001G122400 Sobic002G200200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic002G200200--Sobic001G240000 Sobic002G200200--Sobic003G256200 Sobic002G158800 Sobic002G158800 Sobic002G200200--Sobic002G158800 Sobic002G200200--Sobic008G039600 Sobic001G333000 Sobic001G333000 Sobic002G200200--Sobic001G333000 Sobic006G106400 Sobic006G106400 Sobic002G200200--Sobic006G106400 Sobic003G432500--Sobic001G368500 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G271900 Sobic003G271900 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic003G432500--Sobic002G152800 Sobic001G461700--Sobic008G039600 Sobic009G223200 Sobic009G223200 Sobic001G461700--Sobic009G223200 Sobic001G461700--Sobic002G181000 Sobic001G461700--Sobic002G043600 Sobic001G461700--Sobic007G123600 Sobic001G461700--Sobic003G432500 Sobic009G024300 Sobic009G024300 Sobic001G461700--Sobic009G024300 Sobic002G131700 Sobic002G131700 Sobic001G461700--Sobic002G131700 Sobic003G075100 Sobic003G075100 Sobic001G461700--Sobic003G075100 Sobic004G338300--Sobic002G158800 Sobic007G015300 Sobic007G015300 Sobic004G338300--Sobic007G015300 Sobic001G099000 Sobic001G099000 Sobic004G338300--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic004G338300--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic009G104700 Sobic009G104700 Sobic004G338300--Sobic009G104700 Sobic010G011200 Sobic010G011200 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700
Octagon: transcription factors


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