Gene annotation
Transcriptome id Sobic.002G304100.1
Synonym OVA8, NS1, ATNS1, Sb02g033440
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt A0A1B6QE81
Pfam PF01336 PF00152
Panther DB PTHR22594 PTHR22594:SF6
NCBI CDD -
KEGG Orthology K01893; NARS, asparaginyl-tRNA synthetase
Gene Ontology GO:0003676; nucleic acid binding GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006421asparaginyl-tRNA aminoacylation GO:0005737cytoplasm GO:0004816asparagine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT4G17300 : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os07g30200.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048070 , Zm00025a014642
Brachypodium KQK16216 , KQK16215 , KQK16214
Barley HORVU2Hr1G049240.1 , HORVU2Hr1G049240.2
Wheat TraesCS2D02G235900 , TraesCS2D02G235900 , TraesCS2A02G231500 , TraesCS2A02G231500 , TraesCS2B02G255900 , TraesCS2B02G255900
Populus PNT28624 , PNT28625 , PNT28626


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
2 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
3 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
4 Sobic.003G352500 ribonuclease protein, putative, expressed -
5 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
6 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
7 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
9 Sobic.002G272100 expressed protein -
10 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
11 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
12 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
13 Sobic.008G050400 5-formyltetrahydrofolate cyclo-ligase, putative, expressed -
14 Sobic.003G271900 expressed protein -
15 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.001G516901 - -
17 Sobic.006G108200 expressed protein -
18 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
19 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
20 Sobic.006G132000 glycine-rich protein, putative, expressed -


Gene co-expression network
sample Sobic002G304100 Sobic002G304100 Sobic002G043600 Sobic002G043600 Sobic002G304100--Sobic002G043600 Sobic006G106400 Sobic006G106400 Sobic002G304100--Sobic006G106400 Sobic004G011300 Sobic004G011300 Sobic002G304100--Sobic004G011300 Sobic003G352500 Sobic003G352500 Sobic002G304100--Sobic003G352500 Sobic004G055500 Sobic004G055500 Sobic002G304100--Sobic004G055500 Sobic003G232700 Sobic003G232700 Sobic002G304100--Sobic003G232700 Sobic008G039600 Sobic008G039600 Sobic002G304100--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G304100--Sobic001G495200 Sobic002G272100 Sobic002G272100 Sobic002G304100--Sobic002G272100 Sobic002G043600--Sobic003G232700 Sobic002G181000 Sobic002G181000 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic006G106400--Sobic004G011300 Sobic008G073100 Sobic008G073100 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic001G368500 Sobic001G368500 Sobic006G106400--Sobic001G368500 Sobic005G143500 Sobic005G143500 Sobic006G106400--Sobic005G143500 Sobic002G401800 Sobic002G401800 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic009G148500 Sobic009G148500 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100 Sobic004G011300--Sobic006G106400 Sobic004G011300--Sobic009G148500 Sobic004G011300--Sobic001G495200 Sobic004G336000 Sobic004G336000 Sobic004G011300--Sobic004G336000 Sobic004G011300--Sobic002G181000 Sobic004G011300--Sobic002G043600 Sobic004G011300--Sobic008G039600 Sobic004G011300--Sobic008G073100 Sobic003G301300 Sobic003G301300 Sobic004G011300--Sobic003G301300 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic003G352500--Sobic007G185700 Sobic003G141100 Sobic003G141100 Sobic003G352500--Sobic003G141100 Sobic001G054100 Sobic001G054100 Sobic003G352500--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic003G352500--Sobic006G270200 Sobic001G028100 Sobic001G028100 Sobic003G352500--Sobic001G028100 Sobic001G500600 Sobic001G500600 Sobic003G352500--Sobic001G500600 Sobic001G291900 Sobic001G291900 Sobic004G055500--Sobic001G291900 Sobic004G055500--Sobic006G106400 Sobic006G091300 Sobic006G091300 Sobic004G055500--Sobic006G091300 Sobic001G531400 Sobic001G531400 Sobic004G055500--Sobic001G531400 Sobic003G085000 Sobic003G085000 Sobic004G055500--Sobic003G085000 Sobic004G055500--Sobic002G304100 Sobic007G208300 Sobic007G208300 Sobic004G055500--Sobic007G208300 Sobic004G301200 Sobic004G301200 Sobic004G055500--Sobic004G301200 Sobic004G055500--Sobic004G336000 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic008G039600--Sobic002G181000 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic001G495200--Sobic004G336000 Sobic001G495200--Sobic004G011300 Sobic001G495200--Sobic005G143500 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic001G495200--Sobic002G043600 Sobic002G272100--Sobic002G401800 Sobic002G272100--Sobic008G073100 Sobic002G272100--Sobic001G368500 Sobic008G050400 Sobic008G050400 Sobic002G272100--Sobic008G050400 Sobic002G272100--Sobic008G039600 Sobic002G351600 Sobic002G351600 Sobic002G272100--Sobic002G351600 Sobic002G267900 Sobic002G267900 Sobic002G272100--Sobic002G267900 Sobic002G272100--Sobic001G083100 Sobic002G272100--Sobic005G110400
Octagon: transcription factors


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