Gene annotation
Transcriptome id Sobic.002G200200.1,Sobic.002G200200.3
Synonym Sb02g024590
Functional annotation CAAX amino terminal protease family protein, putative, expressed
UniProt A0A1B6QCJ0 , C5XCS4
Pfam PF02517
Panther DB PTHR10794 PTHR10794:SF53
NCBI CDD -
KEGG Orthology K07052; uncharacterized protein
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G14270 : CAAX amino terminal protease family protein
RAP-DB (Rice) LOC_Os09g24670.1 : CAAX amino terminal protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a046955
Brachypodium KQJ98466 , KQJ90221
Barley -
Wheat TraesCS5D02G239500 , TraesCS5B02G226900 , TraesCS5B02G226900 , TraesCS5A02G228100 , TraesCS5A02G228100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
2 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
3 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
4 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
5 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
6 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
7 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
10 Sobic.003G386300 expressed protein -
11 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
12 Sobic.001G099000 expressed protein -
13 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
14 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G251400 expressed protein -
16 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
17 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
18 Sobic.003G324700 expressed protein -
19 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
20 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase


Gene co-expression network
sample Sobic002G200200 Sobic002G200200 Sobic010G095200 Sobic010G095200 Sobic002G200200--Sobic010G095200 Sobic004G298100 Sobic004G298100 Sobic002G200200--Sobic004G298100 Sobic001G122400 Sobic001G122400 Sobic002G200200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic002G200200--Sobic001G240000 Sobic003G256200 Sobic003G256200 Sobic002G200200--Sobic003G256200 Sobic002G158800 Sobic002G158800 Sobic002G200200--Sobic002G158800 Sobic008G039600 Sobic008G039600 Sobic002G200200--Sobic008G039600 Sobic001G333000 Sobic001G333000 Sobic002G200200--Sobic001G333000 Sobic006G106400 Sobic006G106400 Sobic002G200200--Sobic006G106400 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic004G164100 Sobic004G164100 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic002G251400 Sobic002G251400 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800 Sobic004G298100--Sobic003G256200 Sobic001G391400 Sobic001G391400 Sobic004G298100--Sobic001G391400 Sobic003G246400 Sobic003G246400 Sobic004G298100--Sobic003G246400 Sobic001G453300 Sobic001G453300 Sobic004G298100--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic004G298100--Sobic004G116100 Sobic004G298100--Sobic001G240000 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic004G298100--Sobic004G317900 Sobic001G122400--Sobic003G386300 Sobic004G335800 Sobic004G335800 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic001G191000 Sobic001G191000 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic001G099000 Sobic001G099000 Sobic002G158800--Sobic001G099000 Sobic002G158800--Sobic001G391400 Sobic002G158800--Sobic003G324700 Sobic007G015300 Sobic007G015300 Sobic002G158800--Sobic007G015300 Sobic005G110481 Sobic005G110481 Sobic002G158800--Sobic005G110481 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic005G184300 Sobic005G184300 Sobic002G158800--Sobic005G184300 Sobic009G104700 Sobic009G104700 Sobic002G158800--Sobic009G104700 Sobic005G143500 Sobic005G143500 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic008G039600--Sobic006G106400 Sobic002G401800 Sobic002G401800 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic003G221700 Sobic003G221700 Sobic001G333000--Sobic003G221700 Sobic002G305700 Sobic002G305700 Sobic001G333000--Sobic002G305700 Sobic001G531200 Sobic001G531200 Sobic001G333000--Sobic001G531200 Sobic001G333000--Sobic010G095200 Sobic006G248200 Sobic006G248200 Sobic001G333000--Sobic006G248200 Sobic001G333000--Sobic001G240000 Sobic001G333000--Sobic003G386300 Sobic001G333000--Sobic002G251400 Sobic002G297400 Sobic002G297400 Sobic001G333000--Sobic002G297400 Sobic004G011300 Sobic004G011300 Sobic006G106400--Sobic004G011300 Sobic008G073100 Sobic008G073100 Sobic006G106400--Sobic008G073100 Sobic006G106400--Sobic008G039600 Sobic006G106400--Sobic001G368500 Sobic006G106400--Sobic005G143500 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic009G148500 Sobic009G148500 Sobic006G106400--Sobic009G148500 Sobic006G106400--Sobic002G272100
Octagon: transcription factors


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