Gene annotation
Transcriptome id Sobic.004G119500.2,Sobic.004G119500.1,Sobic.004G119500.3
Synonym PLSP1, Sb04g009960
Functional annotation peptidase, putative, expressed
UniProt A0A1Z5RLZ0 , C5XZL7
Pfam PF10502
Panther DB PTHR12383 PTHR12383:SF25
NCBI CDD KOG0171; Mitochondrial inner membrane protease, subunit IMP1
KEGG Orthology K03100; signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT3G24590 : plastidic type i signal peptidase 1
RAP-DB (Rice) LOC_Os02g16709.1 : peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a019857
Brachypodium KQJ94330
Barley HORVU7Hr1G117320.3 , HORVU7Hr1G117320.2 , HORVU7Hr1G117320.7 , HORVU7Hr1G117320.6 , HORVU7Hr1G117320.5 , HORVU7Hr1G117320.4 , HORVU7Hr1G117320.9 , HORVU7Hr1G117320.8 , HORVU7Hr1G117320.13 , HORVU7Hr1G117320.12 , HORVU7Hr1G117320.11 , HORVU7Hr1G117320.10
Wheat TraesCS7A02G533400 , TraesCS7D02G520700 , TraesCS7B02G450600
Populus -


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cDNA sequences
Sobic.004G119500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
2 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
3 Sobic.003G254600 expressed protein -
4 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
5 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
7 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
8 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
9 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
10 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
11 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
12 Sobic.003G324700 expressed protein -
13 Sobic.006G229300 receptor-like kinase, putative, expressed -
14 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
15 Sobic.001G196200 CRS1/YhbY domain containing protein, expressed -
16 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
17 Sobic.002G013700 PPR2, putative, expressed -
18 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
19 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
20 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -


Gene co-expression network
sample Sobic004G119500 Sobic004G119500 Sobic006G107600 Sobic006G107600 Sobic004G119500--Sobic006G107600 Sobic002G305700 Sobic002G305700 Sobic004G119500--Sobic002G305700 Sobic003G254600 Sobic003G254600 Sobic004G119500--Sobic003G254600 Sobic007G123600 Sobic007G123600 Sobic004G119500--Sobic007G123600 Sobic001G281500 Sobic001G281500 Sobic004G119500--Sobic001G281500 Sobic002G200200 Sobic002G200200 Sobic004G119500--Sobic002G200200 Sobic009G212000 Sobic009G212000 Sobic004G119500--Sobic009G212000 Sobic003G256200 Sobic003G256200 Sobic004G119500--Sobic003G256200 Sobic007G171800 Sobic007G171800 Sobic004G119500--Sobic007G171800 Sobic006G107600--Sobic003G256200 Sobic001G240000 Sobic001G240000 Sobic006G107600--Sobic001G240000 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic001G391400 Sobic001G391400 Sobic006G107600--Sobic001G391400 Sobic006G107600--Sobic002G305700 Sobic001G122400 Sobic001G122400 Sobic006G107600--Sobic001G122400 Sobic001G191000 Sobic001G191000 Sobic006G107600--Sobic001G191000 Sobic001G453300 Sobic001G453300 Sobic006G107600--Sobic001G453300 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic002G305700--Sobic003G256200 Sobic002G305700--Sobic006G107600 Sobic004G191200 Sobic004G191200 Sobic002G305700--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic002G305700--Sobic009G212000 Sobic002G305700--Sobic001G240000 Sobic001G196200 Sobic001G196200 Sobic003G254600--Sobic001G196200 Sobic001G035800 Sobic001G035800 Sobic003G254600--Sobic001G035800 Sobic003G254600--Sobic006G107600 Sobic003G421400 Sobic003G421400 Sobic003G254600--Sobic003G421400 Sobic009G055800 Sobic009G055800 Sobic003G254600--Sobic009G055800 Sobic001G489800 Sobic001G489800 Sobic003G254600--Sobic001G489800 Sobic001G447700 Sobic001G447700 Sobic003G254600--Sobic001G447700 Sobic001G469900 Sobic001G469900 Sobic003G254600--Sobic001G469900 Sobic007G085800 Sobic007G085800 Sobic003G254600--Sobic007G085800 Sobic003G151500 Sobic003G151500 Sobic007G123600--Sobic003G151500 Sobic006G055800 Sobic006G055800 Sobic007G123600--Sobic006G055800 Sobic002G043600 Sobic002G043600 Sobic007G123600--Sobic002G043600 Sobic007G123600--Sobic004G119500 Sobic002G181000 Sobic002G181000 Sobic007G123600--Sobic002G181000 Sobic007G123600--Sobic002G200200 Sobic003G432500 Sobic003G432500 Sobic007G123600--Sobic003G432500 Sobic001G461700 Sobic001G461700 Sobic007G123600--Sobic001G461700 Sobic004G338300 Sobic004G338300 Sobic007G123600--Sobic004G338300 Sobic006G237100 Sobic006G237100 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic001G281500--Sobic001G375000 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic010G027200 Sobic010G027200 Sobic001G281500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic001G281500--Sobic005G184300 Sobic010G095200 Sobic010G095200 Sobic002G200200--Sobic010G095200 Sobic004G298100 Sobic004G298100 Sobic002G200200--Sobic004G298100 Sobic002G200200--Sobic001G122400 Sobic002G200200--Sobic001G240000 Sobic002G200200--Sobic003G256200 Sobic002G158800 Sobic002G158800 Sobic002G200200--Sobic002G158800 Sobic008G039600 Sobic008G039600 Sobic002G200200--Sobic008G039600 Sobic002G200200--Sobic001G333000 Sobic006G106400 Sobic006G106400 Sobic002G200200--Sobic006G106400 Sobic009G212000--Sobic002G305700 Sobic003G202300 Sobic003G202300 Sobic009G212000--Sobic003G202300 Sobic009G212000--Sobic004G191200 Sobic002G190100 Sobic002G190100 Sobic009G212000--Sobic002G190100 Sobic009G212000--Sobic003G256200 Sobic009G212000--Sobic010G095200 Sobic009G212000--Sobic001G453300 Sobic009G212000--Sobic004G298100 Sobic009G212000--Sobic002G200200 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G246400 Sobic003G246400 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200
Octagon: transcription factors


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