Gene annotation
Transcriptome id Sobic.001G214800.2,Sobic.001G214800.1
Synonym ATPRP40C, PRP40C
Functional annotation -
UniProt A0A1B6QK54 , A0A1Z5S6P9
Pfam PF01846 PF00397 PF01846
Panther DB PTHR15377 PTHR15377:SF3
NCBI CDD KOG0155; Transcription factor CA150
KEGG Orthology K12824; TCERG1, transcription elongation regulator 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G19840 : pre-mRNA-processing protein 40C
RAP-DB (Rice) LOC_Os10g34380.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a017571
Brachypodium KQJ97178 , KQJ97179 , KQJ97177
Barley HORVU1Hr1G042550.13 , HORVU1Hr1G042550.12 , HORVU1Hr1G042550.11 , HORVU1Hr1G042550.10 , HORVU1Hr1G042550.15 , HORVU1Hr1G042550.14 , HORVU1Hr1G042550.9 , HORVU1Hr1G042550.8 , HORVU1Hr1G042550.3 , HORVU1Hr1G042550.2 , HORVU1Hr1G042550.1 , HORVU1Hr1G042550.7 , HORVU1Hr1G042550.6 , HORVU1Hr1G042550.5 , HORVU1Hr1G042550.4
Wheat TraesCS1A02G160500 , TraesCS1A02G160500 , TraesCS1B02G176100 , TraesCS1B02G176100 , TraesCS1D02G157600 , TraesCS1D02G157600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
2 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
3 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
4 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
5 Sobic.010G121500 expressed protein K11267: sister chromatid cohesion protein PDS5
6 Sobic.002G344000 expressed protein -
7 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
8 Sobic.001G152100 SWI1, putative, expressed -
9 Sobic.004G351600 expressed protein K18734: protein SMG8
10 Sobic.002G137200 ZOS9-21 - C2H2 zinc finger protein, expressed -
11 Sobic.002G302700 "flowering, a SET (Suppressor of variegation, Enhancer of Zeste, Trithorax) and MYND (Myeloid-Nervy-DEAF1) (SMYD) domain protein (SMYD proteins act as lysine methyltransferases), Ma2 delayed flowering in long days by selectively enhancing the expression of SbPRR37 (Ma1) and SbCO, epistatic interanciton with Ma4"(PubMedID : 30969968)@zinc finger protein, putative, expressed -
12 Sobic.002G429300 importin subunit beta, putative, expressed -
13 Sobic.001G500300 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
14 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
15 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
16 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
17 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
18 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
19 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
20 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1


Gene co-expression network
sample Sobic001G214800 Sobic001G214800 Sobic002G068100 Sobic002G068100 Sobic001G214800--Sobic002G068100 Sobic003G019000 Sobic003G019000 Sobic001G214800--Sobic003G019000 Sobic001G536400 Sobic001G536400 Sobic001G214800--Sobic001G536400 Sobic001G354600 Sobic001G354600 Sobic001G214800--Sobic001G354600 Sobic010G121500 Sobic010G121500 Sobic001G214800--Sobic010G121500 Sobic002G344000 Sobic002G344000 Sobic001G214800--Sobic002G344000 Sobic001G375300 Sobic001G375300 Sobic001G214800--Sobic001G375300 Sobic001G152100 Sobic001G152100 Sobic001G214800--Sobic001G152100 Sobic004G351600 Sobic004G351600 Sobic001G214800--Sobic004G351600 Sobic001G111600 Sobic001G111600 Sobic002G068100--Sobic001G111600 Sobic002G068100--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic002G068100--Sobic003G360400 Sobic004G096400 Sobic004G096400 Sobic002G068100--Sobic004G096400 Sobic004G158400 Sobic004G158400 Sobic002G068100--Sobic004G158400 Sobic006G240100 Sobic006G240100 Sobic002G068100--Sobic006G240100 Sobic002G154000 Sobic002G154000 Sobic002G068100--Sobic002G154000 Sobic002G137200 Sobic002G137200 Sobic002G068100--Sobic002G137200 Sobic002G299700 Sobic002G299700 Sobic002G068100--Sobic002G299700 Sobic003G019000--Sobic001G214800 Sobic003G434700 Sobic003G434700 Sobic003G019000--Sobic003G434700 Sobic009G129100 Sobic009G129100 Sobic003G019000--Sobic009G129100 Sobic001G494500 Sobic001G494500 Sobic003G019000--Sobic001G494500 Sobic003G067100 Sobic003G067100 Sobic003G019000--Sobic003G067100 Sobic007G123600 Sobic007G123600 Sobic003G019000--Sobic007G123600 Sobic003G019000--Sobic001G354600 Sobic003G019000--Sobic001G375300 Sobic001G022500 Sobic001G022500 Sobic003G019000--Sobic001G022500 Sobic003G093800 Sobic003G093800 Sobic001G536400--Sobic003G093800 Sobic009G165700 Sobic009G165700 Sobic001G536400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G536400--Sobic001G441400 Sobic001G451400 Sobic001G451400 Sobic001G536400--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic001G536400--Sobic006G252900 Sobic001G363500 Sobic001G363500 Sobic001G536400--Sobic001G363500 Sobic003G422500 Sobic003G422500 Sobic001G536400--Sobic003G422500 Sobic004G065100 Sobic004G065100 Sobic001G536400--Sobic004G065100 Sobic001G289800 Sobic001G289800 Sobic001G536400--Sobic001G289800 Sobic001G354600--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic001G354600--Sobic010G112100 Sobic001G433800 Sobic001G433800 Sobic001G354600--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic001G354600--Sobic002G068100 Sobic009G044800 Sobic009G044800 Sobic001G354600--Sobic009G044800 Sobic004G223000 Sobic004G223000 Sobic010G121500--Sobic004G223000 Sobic010G206900 Sobic010G206900 Sobic010G121500--Sobic010G206900 Sobic003G241800 Sobic003G241800 Sobic010G121500--Sobic003G241800 Sobic001G230000 Sobic001G230000 Sobic010G121500--Sobic001G230000 Sobic003G389200 Sobic003G389200 Sobic010G121500--Sobic003G389200 Sobic007G062800 Sobic007G062800 Sobic010G121500--Sobic007G062800 Sobic001G174900 Sobic001G174900 Sobic010G121500--Sobic001G174900 Sobic010G010700 Sobic010G010700 Sobic010G121500--Sobic010G010700 Sobic001G454500 Sobic001G454500 Sobic010G121500--Sobic001G454500 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic002G344000--Sobic003G360400 Sobic002G211800 Sobic002G211800 Sobic002G344000--Sobic002G211800 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic002G344000--Sobic001G354600 Sobic002G344000--Sobic010G206900 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G124000 Sobic001G124000 Sobic001G375300--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic001G375300--Sobic004G237100 Sobic002G277600 Sobic002G277600 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic001G152100--Sobic001G375300 Sobic001G152100--Sobic001G214800 Sobic001G500300 Sobic001G500300 Sobic001G152100--Sobic001G500300 Sobic001G222250 Sobic001G222250 Sobic001G152100--Sobic001G222250 Sobic007G159900 Sobic007G159900 Sobic001G152100--Sobic007G159900 Sobic005G220000 Sobic005G220000 Sobic001G152100--Sobic005G220000 Sobic001G152100--Sobic001G536400 Sobic001G152100--Sobic002G068100 Sobic001G362200 Sobic001G362200 Sobic001G152100--Sobic001G362200 Sobic009G256400 Sobic009G256400 Sobic004G351600--Sobic009G256400 Sobic007G063000 Sobic007G063000 Sobic004G351600--Sobic007G063000 Sobic003G166750 Sobic003G166750 Sobic004G351600--Sobic003G166750 Sobic002G042600 Sobic002G042600 Sobic004G351600--Sobic002G042600 Sobic003G095900 Sobic003G095900 Sobic004G351600--Sobic003G095900 Sobic004G276400 Sobic004G276400 Sobic004G351600--Sobic004G276400 Sobic004G351600--Sobic002G133300 Sobic004G351600--Sobic009G165700 Sobic001G370900 Sobic001G370900 Sobic004G351600--Sobic001G370900
Octagon: transcription factors


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