Gene annotation
Transcriptome id Sobic.001G152100.1
Synonym Sb01g013215, DYAD, SWI1
Functional annotation SWI1, putative, expressed
UniProt A0A1B6QJ31
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51330 : SWITCH1
RAP-DB (Rice) LOC_Os03g44760.1 : SWI1, putative, expressed
MaizeGDB (Corn) Zm00025a017233
Brachypodium KQK13949 , PNT74379
Barley HORVU5Hr1G092310.8 , HORVU5Hr1G092310.9 , HORVU5Hr1G092310.1 , HORVU5Hr1G092310.2 , HORVU5Hr1G092310.3 , HORVU5Hr1G092310.4 , HORVU5Hr1G092310.5 , HORVU5Hr1G092310.6 , HORVU5Hr1G092310.7 , HORVU5Hr1G092310.12 , HORVU5Hr1G092310.13 , HORVU5Hr1G092310.10 , HORVU5Hr1G092310.11 , HORVU5Hr1G092310.16 , HORVU5Hr1G092310.17 , HORVU5Hr1G092310.18 , HORVU5Hr1G092310.20 , HORVU5Hr1G092310.14 , HORVU5Hr1G092310.15 , HORVU5Hr1G092310.19
Wheat TraesCS5B02G373300 , TraesCS5B02G373300 , TraesCS5B02G373300 , TraesCS5D02G380600 , TraesCS5D02G380600 , TraesCS5A02G370900 , TraesCS5A02G370900
Populus -


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cDNA sequences
Sobic.001G152100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375300 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
2 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
3 Sobic.001G500300 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
4 Sobic.001G222250 - -
5 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
6 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
7 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
8 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
9 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
11 Sobic.003G019000 uncharacterized protein HI0077, putative, expressed -
12 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
13 Sobic.006G222300 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.003G016900 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
15 Sobic.002G008100 VHS and GAT domain containing protein, expressed -
16 Sobic.007G110700 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
17 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
19 Sobic.003G217900 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.001G111600 expressed protein -


Gene co-expression network
sample Sobic001G152100 Sobic001G152100 Sobic001G375300 Sobic001G375300 Sobic001G152100--Sobic001G375300 Sobic001G214800 Sobic001G214800 Sobic001G152100--Sobic001G214800 Sobic001G500300 Sobic001G500300 Sobic001G152100--Sobic001G500300 Sobic001G222250 Sobic001G222250 Sobic001G152100--Sobic001G222250 Sobic007G159900 Sobic007G159900 Sobic001G152100--Sobic007G159900 Sobic005G220000 Sobic005G220000 Sobic001G152100--Sobic005G220000 Sobic001G536400 Sobic001G536400 Sobic001G152100--Sobic001G536400 Sobic002G068100 Sobic002G068100 Sobic001G152100--Sobic002G068100 Sobic001G362200 Sobic001G362200 Sobic001G152100--Sobic001G362200 Sobic001G360900 Sobic001G360900 Sobic001G375300--Sobic001G360900 Sobic001G124000 Sobic001G124000 Sobic001G375300--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic001G375300--Sobic004G237100 Sobic002G277600 Sobic002G277600 Sobic001G375300--Sobic002G277600 Sobic008G103200 Sobic008G103200 Sobic001G375300--Sobic008G103200 Sobic003G241800 Sobic003G241800 Sobic001G375300--Sobic003G241800 Sobic009G247400 Sobic009G247400 Sobic001G375300--Sobic009G247400 Sobic007G000100 Sobic007G000100 Sobic001G375300--Sobic007G000100 Sobic008G011100 Sobic008G011100 Sobic001G375300--Sobic008G011100 Sobic001G214800--Sobic002G068100 Sobic003G019000 Sobic003G019000 Sobic001G214800--Sobic003G019000 Sobic001G214800--Sobic001G536400 Sobic001G354600 Sobic001G354600 Sobic001G214800--Sobic001G354600 Sobic010G121500 Sobic010G121500 Sobic001G214800--Sobic010G121500 Sobic002G344000 Sobic002G344000 Sobic001G214800--Sobic002G344000 Sobic001G214800--Sobic001G375300 Sobic001G214800--Sobic001G152100 Sobic004G351600 Sobic004G351600 Sobic001G214800--Sobic004G351600 Sobic002G316600 Sobic002G316600 Sobic001G500300--Sobic002G316600 Sobic005G008800 Sobic005G008800 Sobic001G500300--Sobic005G008800 Sobic004G065100 Sobic004G065100 Sobic001G500300--Sobic004G065100 Sobic001G529600 Sobic001G529600 Sobic001G500300--Sobic001G529600 Sobic004G209600 Sobic004G209600 Sobic001G500300--Sobic004G209600 Sobic001G289800 Sobic001G289800 Sobic001G500300--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic001G500300--Sobic001G540400 Sobic010G143800 Sobic010G143800 Sobic001G500300--Sobic010G143800 Sobic009G165700 Sobic009G165700 Sobic001G500300--Sobic009G165700 Sobic001G222250--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic001G222250--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic001G222250--Sobic010G079900 Sobic004G135300 Sobic004G135300 Sobic001G222250--Sobic004G135300 Sobic001G191600 Sobic001G191600 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G081200 Sobic001G081200 Sobic001G222250--Sobic001G081200 Sobic001G298600 Sobic001G298600 Sobic001G222250--Sobic001G298600 Sobic001G222250--Sobic001G362200 Sobic003G360400 Sobic003G360400 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic010G112100 Sobic010G112100 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic003G188400 Sobic003G188400 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic003G093800 Sobic003G093800 Sobic001G536400--Sobic003G093800 Sobic001G536400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G536400--Sobic001G441400 Sobic001G451400 Sobic001G451400 Sobic001G536400--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic001G536400--Sobic006G252900 Sobic001G363500 Sobic001G363500 Sobic001G536400--Sobic001G363500 Sobic003G422500 Sobic003G422500 Sobic001G536400--Sobic003G422500 Sobic001G536400--Sobic004G065100 Sobic001G536400--Sobic001G289800 Sobic002G068100--Sobic001G111600 Sobic002G068100--Sobic001G354600 Sobic002G068100--Sobic003G360400 Sobic004G096400 Sobic004G096400 Sobic002G068100--Sobic004G096400 Sobic002G068100--Sobic004G158400 Sobic006G240100 Sobic006G240100 Sobic002G068100--Sobic006G240100 Sobic002G154000 Sobic002G154000 Sobic002G068100--Sobic002G154000 Sobic002G137200 Sobic002G137200 Sobic002G068100--Sobic002G137200 Sobic002G299700 Sobic002G299700 Sobic002G068100--Sobic002G299700 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic001G362200--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic002G134600 Sobic002G134600 Sobic001G362200--Sobic002G134600 Sobic001G362200--Sobic007G183900
Octagon: transcription factors


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