Gene annotation
Transcriptome id Sobic.003G362600.1
Synonym Sb03g040430
Functional annotation AT hook motif family protein, expressed
UniProt A0A1B6Q739
Pfam -
Panther DB PTHR15052 PTHR15052:SF2
NCBI CDD -
KEGG Orthology K15200; general transcription factor 3C polypeptide 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19485 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g27140.1 : AT hook motif family protein, expressed
MaizeGDB (Corn) Zm00025a026778
Brachypodium KQK10666 , KQK10667 , PNT73223 , PNT73224
Barley HORVU1Hr1G088600.15 , HORVU1Hr1G088600.14 , HORVU1Hr1G088600.16 , HORVU1Hr1G088600.11 , HORVU1Hr1G088600.13 , HORVU1Hr1G088600.12 , HORVU1Hr1G088600.19 , HORVU1Hr1G088600.18 , HORVU1Hr1G088600.1 , HORVU1Hr1G088600.3 , HORVU1Hr1G088600.2 , HORVU1Hr1G088600.5 , HORVU1Hr1G088600.4 , HORVU1Hr1G088600.9 , HORVU1Hr1G088600.20 , HORVU1Hr1G088600.21 , HORVU1Hr1G088600.22 , HORVU1Hr1G088600.23
Wheat TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3A02G371100 , TraesCS3B02G403300 , TraesCS3B02G403300 , TraesCS3B02G403300 , TraesCS3B02G403300 , TraesCS3B02G403300 , TraesCS1A02G402200 , TraesCS1A02G402200 , TraesCS3B02G403300 , TraesCS1B02G431300 , TraesCS1D02G409800 , TraesCS1D02G409800 , TraesCS3D02G364200 , TraesCS3D02G364200 , TraesCS3D02G364200 , TraesCS3D02G364200 , TraesCS3D02G364200 , TraesCS3D02G364200 , TraesCS3D02G364200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
2 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
3 Sobic.003G166750 - K15188: cyclin T
4 Sobic.002G211800 AT-rich interaction region, putative, expressed -
5 Sobic.008G087866 - -
6 Sobic.004G023000 SAC9, putative, expressed -
7 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
8 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
9 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
10 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
12 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
13 Sobic.010G226000 expressed protein -
14 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
15 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
16 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
17 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
18 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
19 Sobic.001G289800 BAH domain containing protein, putative, expressed -
20 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80


Gene co-expression network
sample Sobic003G362600 Sobic003G362600 Sobic009G165700 Sobic009G165700 Sobic003G362600--Sobic009G165700 Sobic001G251200 Sobic001G251200 Sobic003G362600--Sobic001G251200 Sobic003G166750 Sobic003G166750 Sobic003G362600--Sobic003G166750 Sobic002G211800 Sobic002G211800 Sobic003G362600--Sobic002G211800 Sobic008G087866 Sobic008G087866 Sobic003G362600--Sobic008G087866 Sobic004G023000 Sobic004G023000 Sobic003G362600--Sobic004G023000 Sobic003G093800 Sobic003G093800 Sobic003G362600--Sobic003G093800 Sobic004G091100 Sobic004G091100 Sobic003G362600--Sobic004G091100 Sobic001G441400 Sobic001G441400 Sobic003G362600--Sobic001G441400 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic001G251200--Sobic003G362600 Sobic001G128300 Sobic001G128300 Sobic001G251200--Sobic001G128300 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic004G261600 Sobic004G261600 Sobic001G251200--Sobic004G261600 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic006G131000 Sobic006G131000 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic001G289800 Sobic001G289800 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic001G194200 Sobic001G194200 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic002G211800--Sobic003G166750 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic002G211800--Sobic003G362600 Sobic008G087866--Sobic009G165700 Sobic008G087866--Sobic003G422500 Sobic008G087866--Sobic008G001200 Sobic001G117200 Sobic001G117200 Sobic008G087866--Sobic001G117200 Sobic008G087866--Sobic003G166750 Sobic005G001000 Sobic005G001000 Sobic008G087866--Sobic005G001000 Sobic008G087866--Sobic003G170900 Sobic008G087866--Sobic001G194200 Sobic008G087866--Sobic001G370900 Sobic004G023000--Sobic009G165700 Sobic004G023000--Sobic010G247800 Sobic003G095900 Sobic003G095900 Sobic004G023000--Sobic003G095900 Sobic004G314000 Sobic004G314000 Sobic004G023000--Sobic004G314000 Sobic004G023000--Sobic009G256400 Sobic010G139000 Sobic010G139000 Sobic004G023000--Sobic010G139000 Sobic004G023000--Sobic002G211800 Sobic004G263600 Sobic004G263600 Sobic004G023000--Sobic004G263600 Sobic004G023000--Sobic010G206900 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700 Sobic004G091100--Sobic009G165700 Sobic004G091100--Sobic001G451400 Sobic010G118950 Sobic010G118950 Sobic004G091100--Sobic010G118950 Sobic009G191000 Sobic009G191000 Sobic004G091100--Sobic009G191000 Sobic004G091100--Sobic008G087866 Sobic004G091100--Sobic001G128300 Sobic004G091100--Sobic001G534700 Sobic004G091100--Sobic003G422500 Sobic001G050200 Sobic001G050200 Sobic004G091100--Sobic001G050200 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic005G027400 Sobic005G027400 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100
Octagon: transcription factors


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