Gene annotation
Transcriptome id Sobic.001G500300.1
Synonym Sb01g046740
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WXU5
Pfam PF15519 PF00076
Panther DB PTHR24012 PTHR24012:SF361
NCBI CDD KOG0147; Transcriptional coactivator CAPER (RRM superfamily)
KEGG Orthology K13091; RBM39, RNA-binding protein 39
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G09880 : Splicing factor, CC1-like
RAP-DB (Rice) LOC_Os03g05830.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a017742 , Zm00025a053438
Brachypodium KQJ96858 , KQK23594
Barley HORVU4Hr1G072280.20 , HORVU4Hr1G072280.21 , HORVU4Hr1G072280.22 , HORVU4Hr1G072280.23 , HORVU4Hr1G072280.24 , HORVU4Hr1G072280.25 , HORVU4Hr1G072280.26 , HORVU4Hr1G072280.19 , HORVU4Hr1G072280.18 , HORVU4Hr1G072280.15 , HORVU4Hr1G072280.14 , HORVU4Hr1G072280.17 , HORVU4Hr1G072280.16 , HORVU4Hr1G072280.11 , HORVU4Hr1G072280.10 , HORVU4Hr1G072280.13 , HORVU4Hr1G072280.12 , HORVU1Hr1G036640.10 , HORVU4Hr1G072280.9 , HORVU4Hr1G072280.8 , HORVU4Hr1G072280.1 , HORVU4Hr1G072280.3 , HORVU4Hr1G072280.2 , HORVU4Hr1G072280.5 , HORVU4Hr1G072280.4 , HORVU4Hr1G072280.7 , HORVU4Hr1G072280.6 , HORVU1Hr1G036640.1 , HORVU1Hr1G036640.2 , HORVU1Hr1G036640.4 , HORVU1Hr1G036640.5 , HORVU1Hr1G036640.23 , HORVU1Hr1G036640.21 , HORVU1Hr1G036640.20 , HORVU1Hr1G036640.25 , HORVU1Hr1G036640.24 , HORVU1Hr1G036640.18 , HORVU1Hr1G036640.19 , HORVU1Hr1G036640.12 , HORVU1Hr1G036640.11 , HORVU1Hr1G036640.16 , HORVU1Hr1G036640.17 , HORVU1Hr1G036640.14 , HORVU1Hr1G036640.15
Wheat TraesCS4A02G036900 , TraesCS4D02G269200 , TraesCS4B02G269900 , TraesCS4B02G269900 , TraesCS4B02G269900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G316600 expressed protein -
2 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
3 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
4 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
5 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
6 Sobic.001G289800 BAH domain containing protein, putative, expressed -
7 Sobic.001G540400 expressed protein -
8 Sobic.010G143800 expressed protein -
9 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
10 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
11 Sobic.003G166750 - K15188: cyclin T
12 Sobic.001G261501 - -
13 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
14 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
15 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
16 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G241200 protein kinase domain containing protein, expressed -
18 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
19 Sobic.003G422500 expressed protein -
20 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1


Gene co-expression network
sample Sobic001G500300 Sobic001G500300 Sobic002G316600 Sobic002G316600 Sobic001G500300--Sobic002G316600 Sobic005G008800 Sobic005G008800 Sobic001G500300--Sobic005G008800 Sobic004G065100 Sobic004G065100 Sobic001G500300--Sobic004G065100 Sobic001G529600 Sobic001G529600 Sobic001G500300--Sobic001G529600 Sobic004G209600 Sobic004G209600 Sobic001G500300--Sobic004G209600 Sobic001G289800 Sobic001G289800 Sobic001G500300--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic001G500300--Sobic001G540400 Sobic010G143800 Sobic010G143800 Sobic001G500300--Sobic010G143800 Sobic009G165700 Sobic009G165700 Sobic001G500300--Sobic009G165700 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G112300 Sobic005G112300 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic002G309600 Sobic002G309600 Sobic004G065100--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic001G529600--Sobic002G316600 Sobic001G529600--Sobic010G079500 Sobic001G529600--Sobic003G166750 Sobic001G529600--Sobic009G109200 Sobic001G542500 Sobic001G542500 Sobic001G529600--Sobic001G542500 Sobic001G529600--Sobic001G289800 Sobic007G063000 Sobic007G063000 Sobic001G529600--Sobic007G063000 Sobic001G529600--Sobic005G008800 Sobic005G122700 Sobic005G122700 Sobic001G529600--Sobic005G122700 Sobic010G139000 Sobic010G139000 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic010G010700 Sobic010G010700 Sobic004G209600--Sobic010G010700 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic004G209600--Sobic002G134200 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic003G280800 Sobic003G280800 Sobic004G209600--Sobic003G280800 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic005G001000 Sobic005G001000 Sobic001G289800--Sobic005G001000 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200
Octagon: transcription factors


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