Gene annotation
Transcriptome id Sobic.007G222900.1,Sobic.007G222900.3,Sobic.007G222900.2,Sobic.007G222900.4
Synonym Sb07g028810
Functional annotation RNA recognition motif family protein, expressed
UniProt C5YJM6
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF425 PTHR24012:SF425 PTHR24012
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K14398; cleavage and polyadenylation specificity factor subunit 6/7
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G55670 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g38240.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a004969 , Zm00025a004970 , Zm00025a033726
Brachypodium PNT64786 , PNT68332
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G290300 zinc finger Ran-binding domain-containing protein 2, putative, expressed -
2 Sobic.004G010101 - -
3 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
4 Sobic.008G081150 - -
5 Sobic.009G094800 sugar porter, putative, expressed -
6 Sobic.010G143200 - -
7 Sobic.007G071000 no apical meristem protein, putative, expressed -
8 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
10 Sobic.009G027350 - -
11 Sobic.001G107900 fip1 motif family protein, expressed -
12 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
13 Sobic.007G112900 - -
14 Sobic.006G043901 - -
15 Sobic.004G135300 - -
16 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
17 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
18 Sobic.007G054100 stress-induced protein, putative, expressed -
19 Sobic.008G152200 DC1 domain-containing protein, putative, expressed -
20 Sobic.005G007700 expressed protein -


Gene co-expression network
sample Sobic007G222900 Sobic007G222900 Sobic002G290300 Sobic002G290300 Sobic007G222900--Sobic002G290300 Sobic004G010101 Sobic004G010101 Sobic007G222900--Sobic004G010101 Sobic002G040800 Sobic002G040800 Sobic007G222900--Sobic002G040800 Sobic008G081150 Sobic008G081150 Sobic007G222900--Sobic008G081150 Sobic009G094800 Sobic009G094800 Sobic007G222900--Sobic009G094800 Sobic010G143200 Sobic010G143200 Sobic007G222900--Sobic010G143200 Sobic007G071000 Sobic007G071000 Sobic007G222900--Sobic007G071000 Sobic006G042200 Sobic006G042200 Sobic007G222900--Sobic006G042200 Sobic005G084400 Sobic005G084400 Sobic007G222900--Sobic005G084400 Sobic002G290300--Sobic007G222900 Sobic002G290300--Sobic002G040800 Sobic010G171100 Sobic010G171100 Sobic002G290300--Sobic010G171100 Sobic001G107900 Sobic001G107900 Sobic002G290300--Sobic001G107900 Sobic010G228700 Sobic010G228700 Sobic002G290300--Sobic010G228700 Sobic004G237100 Sobic004G237100 Sobic002G290300--Sobic004G237100 Sobic002G290300--Sobic009G094800 Sobic002G290300--Sobic004G010101 Sobic002G290300--Sobic005G084400 Sobic009G027350 Sobic009G027350 Sobic004G010101--Sobic009G027350 Sobic004G010101--Sobic006G042200 Sobic004G010101--Sobic007G222900 Sobic008G125600 Sobic008G125600 Sobic004G010101--Sobic008G125600 Sobic007G054100 Sobic007G054100 Sobic004G010101--Sobic007G054100 Sobic007G112900 Sobic007G112900 Sobic004G010101--Sobic007G112900 Sobic003G159450 Sobic003G159450 Sobic004G010101--Sobic003G159450 Sobic001G284800 Sobic001G284800 Sobic004G010101--Sobic001G284800 Sobic009G067501 Sobic009G067501 Sobic004G010101--Sobic009G067501 Sobic002G040800--Sobic010G228700 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic003G396300 Sobic003G396300 Sobic008G081150--Sobic003G396300 Sobic008G081150--Sobic009G094800 Sobic008G152200 Sobic008G152200 Sobic008G081150--Sobic008G152200 Sobic008G081150--Sobic007G222900 Sobic008G081150--Sobic007G071000 Sobic008G081150--Sobic004G010101 Sobic006G122900 Sobic006G122900 Sobic008G081150--Sobic006G122900 Sobic009G205600 Sobic009G205600 Sobic008G081150--Sobic009G205600 Sobic004G096300 Sobic004G096300 Sobic008G081150--Sobic004G096300 Sobic009G094800--Sobic002G040800 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic010G143200--Sobic007G112900 Sobic010G143200--Sobic003G159450 Sobic001G261496 Sobic001G261496 Sobic010G143200--Sobic001G261496 Sobic001G191100 Sobic001G191100 Sobic010G143200--Sobic001G191100 Sobic008G000900 Sobic008G000900 Sobic010G143200--Sobic008G000900 Sobic004G096500 Sobic004G096500 Sobic010G143200--Sobic004G096500 Sobic010G143200--Sobic008G125600 Sobic008G091671 Sobic008G091671 Sobic010G143200--Sobic008G091671 Sobic009G178800 Sobic009G178800 Sobic010G143200--Sobic009G178800 Sobic007G071000--Sobic008G152200 Sobic001G377000 Sobic001G377000 Sobic007G071000--Sobic001G377000 Sobic007G071000--Sobic004G096300 Sobic003G264901 Sobic003G264901 Sobic007G071000--Sobic003G264901 Sobic010G172200 Sobic010G172200 Sobic007G071000--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic007G071000--Sobic001G293800 Sobic003G153800 Sobic003G153800 Sobic007G071000--Sobic003G153800 Sobic007G071000--Sobic009G205600 Sobic001G053900 Sobic001G053900 Sobic007G071000--Sobic001G053900 Sobic006G042200--Sobic004G135300 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic006G042200--Sobic008G125600 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic006G042200--Sobic002G040800 Sobic003G144950 Sobic003G144950 Sobic005G084400--Sobic003G144950 Sobic004G246900 Sobic004G246900 Sobic005G084400--Sobic004G246900 Sobic005G084400--Sobic010G143200 Sobic005G110475 Sobic005G110475 Sobic005G084400--Sobic005G110475 Sobic009G103600 Sobic009G103600 Sobic005G084400--Sobic009G103600 Sobic005G084400--Sobic001G107900 Sobic002G313400 Sobic002G313400 Sobic005G084400--Sobic002G313400 Sobic008G165700 Sobic008G165700 Sobic005G084400--Sobic008G165700 Sobic001G261900 Sobic001G261900 Sobic005G084400--Sobic001G261900
Octagon: transcription factors


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