Gene annotation
Transcriptome id Sobic.002G290300.1
Synonym Sb02g032170, TAF15
Functional annotation zinc finger Ran-binding domain-containing protein 2, putative, expressed
UniProt C5X7P2
Pfam PF00076 PF00641
Panther DB PTHR12999
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G50300 : TBP-associated factor 15
RAP-DB (Rice) LOC_Os09g12800.1 : zinc finger Ran-binding domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a014522 , Zm00025a047956
Brachypodium KQK14891
Barley HORVU5Hr1G054500.17 , HORVU5Hr1G054500.16 , HORVU5Hr1G054500.15 , HORVU5Hr1G054500.14 , HORVU5Hr1G054500.13 , HORVU5Hr1G054500.12 , HORVU5Hr1G054500.11 , HORVU5Hr1G054500.10 , HORVU5Hr1G054500.18 , HORVU5Hr1G054500.9 , HORVU5Hr1G054500.8 , HORVU5Hr1G054500.7 , HORVU5Hr1G054500.6 , HORVU5Hr1G054500.5 , HORVU5Hr1G054500.4 , HORVU5Hr1G054500.3 , HORVU5Hr1G054500.2 , HORVU5Hr1G054500.1
Wheat TraesCS5D02G183400 , TraesCS5D02G183400 , TraesCS5D02G183400 , TraesCS5D02G183400 , TraesCS5A02G178900 , TraesCS5A02G178900 , TraesCS5A02G178900 , TraesCS5B02G176600 , TraesCS5B02G176600
Populus -


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cDNA sequences
Sobic.002G290300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G222900 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
2 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
4 Sobic.001G107900 fip1 motif family protein, expressed -
5 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
6 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
7 Sobic.009G094800 sugar porter, putative, expressed -
8 Sobic.004G010101 - -
9 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
10 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.010G143200 - -
12 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
14 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
15 Sobic.004G135300 - -
16 Sobic.001G544500 expressed protein -
17 Sobic.009G027350 - -
18 Sobic.006G080000 protein of unknown function domain containing protein, expressed K14525: ribonucleases P/MRP protein subunit RPP25
19 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -
20 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1


Gene co-expression network
sample Sobic002G290300 Sobic002G290300 Sobic007G222900 Sobic007G222900 Sobic002G290300--Sobic007G222900 Sobic002G040800 Sobic002G040800 Sobic002G290300--Sobic002G040800 Sobic010G171100 Sobic010G171100 Sobic002G290300--Sobic010G171100 Sobic001G107900 Sobic001G107900 Sobic002G290300--Sobic001G107900 Sobic010G228700 Sobic010G228700 Sobic002G290300--Sobic010G228700 Sobic004G237100 Sobic004G237100 Sobic002G290300--Sobic004G237100 Sobic009G094800 Sobic009G094800 Sobic002G290300--Sobic009G094800 Sobic004G010101 Sobic004G010101 Sobic002G290300--Sobic004G010101 Sobic005G084400 Sobic005G084400 Sobic002G290300--Sobic005G084400 Sobic007G222900--Sobic002G290300 Sobic007G222900--Sobic004G010101 Sobic007G222900--Sobic002G040800 Sobic008G081150 Sobic008G081150 Sobic007G222900--Sobic008G081150 Sobic007G222900--Sobic009G094800 Sobic010G143200 Sobic010G143200 Sobic007G222900--Sobic010G143200 Sobic007G071000 Sobic007G071000 Sobic007G222900--Sobic007G071000 Sobic006G042200 Sobic006G042200 Sobic007G222900--Sobic006G042200 Sobic007G222900--Sobic005G084400 Sobic002G040800--Sobic010G228700 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic004G135300 Sobic004G135300 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000 Sobic004G095300 Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic001G542700 Sobic001G542700 Sobic001G107900--Sobic001G542700 Sobic004G216500 Sobic004G216500 Sobic001G107900--Sobic004G216500 Sobic009G138800 Sobic009G138800 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic008G192600 Sobic008G192600 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G241200 Sobic001G241200 Sobic001G107900--Sobic001G241200 Sobic007G117400 Sobic007G117400 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600 Sobic010G228700--Sobic001G544500 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic004G237100--Sobic001G088100 Sobic001G375300 Sobic001G375300 Sobic004G237100--Sobic001G375300 Sobic004G237100--Sobic002G277600 Sobic005G021500 Sobic005G021500 Sobic004G237100--Sobic005G021500 Sobic004G088200 Sobic004G088200 Sobic004G237100--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic004G237100--Sobic005G079800 Sobic004G264300 Sobic004G264300 Sobic004G237100--Sobic004G264300 Sobic002G127100 Sobic002G127100 Sobic004G237100--Sobic002G127100 Sobic001G124000 Sobic001G124000 Sobic004G237100--Sobic001G124000 Sobic009G094800--Sobic002G040800 Sobic009G094800--Sobic002G174900 Sobic003G308700 Sobic003G308700 Sobic009G094800--Sobic003G308700 Sobic001G429300 Sobic001G429300 Sobic009G094800--Sobic001G429300 Sobic007G062500 Sobic007G062500 Sobic009G094800--Sobic007G062500 Sobic009G094800--Sobic008G081150 Sobic001G427500 Sobic001G427500 Sobic009G094800--Sobic001G427500 Sobic006G028300 Sobic006G028300 Sobic009G094800--Sobic006G028300 Sobic001G031300 Sobic001G031300 Sobic009G094800--Sobic001G031300 Sobic009G027350 Sobic009G027350 Sobic004G010101--Sobic009G027350 Sobic004G010101--Sobic006G042200 Sobic004G010101--Sobic007G222900 Sobic008G125600 Sobic008G125600 Sobic004G010101--Sobic008G125600 Sobic007G054100 Sobic007G054100 Sobic004G010101--Sobic007G054100 Sobic007G112900 Sobic007G112900 Sobic004G010101--Sobic007G112900 Sobic003G159450 Sobic003G159450 Sobic004G010101--Sobic003G159450 Sobic001G284800 Sobic001G284800 Sobic004G010101--Sobic001G284800 Sobic009G067501 Sobic009G067501 Sobic004G010101--Sobic009G067501 Sobic003G144950 Sobic003G144950 Sobic005G084400--Sobic003G144950 Sobic004G246900 Sobic004G246900 Sobic005G084400--Sobic004G246900 Sobic005G084400--Sobic010G143200 Sobic005G110475 Sobic005G110475 Sobic005G084400--Sobic005G110475 Sobic009G103600 Sobic009G103600 Sobic005G084400--Sobic009G103600 Sobic005G084400--Sobic001G107900 Sobic002G313400 Sobic002G313400 Sobic005G084400--Sobic002G313400 Sobic008G165700 Sobic008G165700 Sobic005G084400--Sobic008G165700 Sobic001G261900 Sobic001G261900 Sobic005G084400--Sobic001G261900
Octagon: transcription factors


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