Gene annotation
Transcriptome id Sobic.006G042200.1
Synonym Sb06g010096
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt A0A1B6PK24
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF162
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os04g30490.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a011887
Brachypodium KQK22285 , PNT77640 , PNT60859 , PNT77641 , KQJ82173 , KQK22286
Barley HORVU2Hr1G068090.28 , HORVU2Hr1G068090.29 , HORVU2Hr1G068090.24 , HORVU2Hr1G068090.25 , HORVU2Hr1G068090.26 , HORVU2Hr1G068090.27 , HORVU2Hr1G068090.20 , HORVU2Hr1G068090.21 , HORVU2Hr1G068090.22 , HORVU2Hr1G068090.23 , HORVU2Hr1G068090.11 , HORVU2Hr1G068090.10 , HORVU2Hr1G068090.13 , HORVU2Hr1G068090.12 , HORVU2Hr1G068090.15 , HORVU2Hr1G068090.14 , HORVU2Hr1G068090.17 , HORVU2Hr1G068090.16 , HORVU2Hr1G068090.19 , HORVU2Hr1G068090.18 , HORVU2Hr1G068090.5 , HORVU2Hr1G068090.4 , HORVU2Hr1G068090.7 , HORVU2Hr1G068090.6 , HORVU2Hr1G068090.1 , HORVU2Hr1G068090.3 , HORVU2Hr1G068090.2 , HORVU2Hr1G068090.9 , HORVU2Hr1G068090.8 , HORVU7Hr1G121100.4 , HORVU7Hr1G121100.5 , HORVU7Hr1G121100.2 , HORVU7Hr1G121100.3 , HORVU7Hr1G121100.1
Wheat TraesCS5D02G378200 , TraesCS5B02G370800 , TraesCS5A02G368800 , TraesCS5A02G368600 , TraesCS5A02G368600 , TraesCS7A02G554500 , TraesCS7B02G478700 , TraesCS2A02G278500 , TraesCS5D02G378100 , TraesCS5D02G378100 , TraesCS2D02G277400 , TraesCS5D02G378300 , TraesCS2B02G296000 , TraesCS2B02G296000 , TraesCS5A02G368700 , TraesCS5B02G371100 , TraesCS2A02G278400 , TraesCS2A02G278400 , TraesCS5B02G371200 , TraesCS7B02G479000 , TraesCS2B02G296000 , TraesCS2B02G296100 , TraesCS2D02G277600 , TraesCS7B02G477900
Populus PNT16026 , PNT16025 , PNT16024 , PNT16023


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G135300 - -
2 Sobic.007G054100 stress-induced protein, putative, expressed -
3 Sobic.001G222250 - -
4 Sobic.004G174900 - -
5 Sobic.008G125600 - -
6 Sobic.004G010101 - -
7 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
8 Sobic.002G073900 expressed protein -
9 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.001G351100 LOL3, putative, expressed -
11 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
12 Sobic.001G284800 histone H3, putative, expressed K11253: histone H3
13 Sobic.009G027350 - -
14 Sobic.009G233300 60S ribosomal protein L18a-1, putative, expressed -
15 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
16 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
17 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
18 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
19 Sobic.003G088700 - -
20 Sobic.004G192200 choline transporter-related, putative, expressed -


Gene co-expression network
sample Sobic006G042200 Sobic006G042200 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic002G040800 Sobic002G040800 Sobic006G042200--Sobic002G040800 Sobic003G084900 Sobic003G084900 Sobic004G135300--Sobic003G084900 Sobic004G135300--Sobic001G222250 Sobic004G135300--Sobic006G042200 Sobic001G409600 Sobic001G409600 Sobic004G135300--Sobic001G409600 Sobic006G273200 Sobic006G273200 Sobic004G135300--Sobic006G273200 Sobic003G088700 Sobic003G088700 Sobic004G135300--Sobic003G088700 Sobic005G128400 Sobic005G128400 Sobic004G135300--Sobic005G128400 Sobic007G009400 Sobic007G009400 Sobic004G135300--Sobic007G009400 Sobic001G267900 Sobic001G267900 Sobic004G135300--Sobic001G267900 Sobic003G308700 Sobic003G308700 Sobic007G054100--Sobic003G308700 Sobic007G054100--Sobic006G042200 Sobic002G273700 Sobic002G273700 Sobic007G054100--Sobic002G273700 Sobic007G054100--Sobic002G073900 Sobic003G153800 Sobic003G153800 Sobic007G054100--Sobic003G153800 Sobic002G174900 Sobic002G174900 Sobic007G054100--Sobic002G174900 Sobic002G187801 Sobic002G187801 Sobic007G054100--Sobic002G187801 Sobic004G096300 Sobic004G096300 Sobic007G054100--Sobic004G096300 Sobic005G090600 Sobic005G090600 Sobic007G054100--Sobic005G090600 Sobic010G143800 Sobic010G143800 Sobic001G222250--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic001G222250--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic001G222250--Sobic010G079900 Sobic001G222250--Sobic004G135300 Sobic001G191600 Sobic001G191600 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G081200 Sobic001G081200 Sobic001G222250--Sobic001G081200 Sobic001G298600 Sobic001G298600 Sobic001G222250--Sobic001G298600 Sobic001G362200 Sobic001G362200 Sobic001G222250--Sobic001G362200 Sobic004G174900--Sobic006G042200 Sobic009G233300 Sobic009G233300 Sobic004G174900--Sobic009G233300 Sobic004G174900--Sobic002G073900 Sobic008G080200 Sobic008G080200 Sobic004G174900--Sobic008G080200 Sobic001G351100 Sobic001G351100 Sobic004G174900--Sobic001G351100 Sobic002G137800 Sobic002G137800 Sobic004G174900--Sobic002G137800 Sobic004G174900--Sobic001G362200 Sobic006G119800 Sobic006G119800 Sobic004G174900--Sobic006G119800 Sobic001G284800 Sobic001G284800 Sobic004G174900--Sobic001G284800 Sobic008G125501 Sobic008G125501 Sobic008G125600--Sobic008G125501 Sobic008G000900 Sobic008G000900 Sobic008G125600--Sobic008G000900 Sobic003G159450 Sobic003G159450 Sobic008G125600--Sobic003G159450 Sobic001G111900 Sobic001G111900 Sobic008G125600--Sobic001G111900 Sobic008G125600--Sobic003G088700 Sobic007G112900 Sobic007G112900 Sobic008G125600--Sobic007G112900 Sobic004G062800 Sobic004G062800 Sobic008G125600--Sobic004G062800 Sobic010G056000 Sobic010G056000 Sobic008G125600--Sobic010G056000 Sobic001G454401 Sobic001G454401 Sobic008G125600--Sobic001G454401 Sobic009G027350 Sobic009G027350 Sobic004G010101--Sobic009G027350 Sobic004G010101--Sobic006G042200 Sobic007G222900 Sobic007G222900 Sobic004G010101--Sobic007G222900 Sobic004G010101--Sobic008G125600 Sobic004G010101--Sobic007G054100 Sobic004G010101--Sobic007G112900 Sobic004G010101--Sobic003G159450 Sobic004G010101--Sobic001G284800 Sobic009G067501 Sobic009G067501 Sobic004G010101--Sobic009G067501 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic009G008100--Sobic006G042200 Sobic009G008100--Sobic003G308700 Sobic009G008100--Sobic002G073900 Sobic004G227300 Sobic004G227300 Sobic009G008100--Sobic004G227300 Sobic009G008100--Sobic001G222250 Sobic009G008100--Sobic002G040800 Sobic001G261597 Sobic001G261597 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300 Sobic002G073900--Sobic003G308700 Sobic005G072200 Sobic005G072200 Sobic002G073900--Sobic005G072200 Sobic002G073900--Sobic006G042200 Sobic002G073900--Sobic007G054100 Sobic002G073900--Sobic001G261597 Sobic004G092000 Sobic004G092000 Sobic002G073900--Sobic004G092000 Sobic002G073900--Sobic009G008100 Sobic002G073900--Sobic004G227300 Sobic010G009400 Sobic010G009400 Sobic002G073900--Sobic010G009400 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic002G040800--Sobic004G135300 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic006G263000 Sobic006G263000 Sobic002G040800--Sobic006G263000
Octagon: transcription factors


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