Gene annotation
Transcriptome id Sobic.001G351100.4,Sobic.001G351100.3,Sobic.001G351100.2
Synonym ATMC1, Sb01g033600, MCP1B, ATMCPB1, LOL3, AMC1
Functional annotation LOL3, putative, expressed
UniProt C5WXQ4
Pfam PF06943 PF00656
Panther DB PTHR31773 PTHR31773:SF5
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G02170 : metacaspase 1
RAP-DB (Rice) LOC_Os03g27210.1 : LOL3, putative, expressed
MaizeGDB (Corn) Zm00025a002724 , Zm00025a052099 , Zm00025a052098 , Zm00025a002719 , Zm00025a052100
Brachypodium KQK21439 , KQK21440
Barley HORVU3Hr1G020830.2 , HORVU3Hr1G020830.1 , HORVU1Hr1G071130.7 , HORVU1Hr1G071130.6 , HORVU1Hr1G071130.5 , HORVU1Hr1G071130.4 , HORVU1Hr1G071130.2 , HORVU1Hr1G071130.1 , HORVU1Hr1G071130.9 , HORVU1Hr1G071130.8
Wheat TraesCS3B02G133900 , TraesCS1D02G442100 , TraesCS1A02G432800 , TraesCS1B02G468600 , TraesCS3A02G114300 , TraesCS3D02G116800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G072200 lipase, putative, expressed -
2 Sobic.003G422700 amino acid permease family protein, putative, expressed -
3 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.004G251300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
6 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
7 Sobic.002G073900 expressed protein -
8 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
9 Sobic.007G054100 stress-induced protein, putative, expressed -
10 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
11 Sobic.009G032400 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
12 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
13 Sobic.006G065900 expressed protein -
14 Sobic.003G413500 expressed protein -
15 Sobic.004G174900 - -
16 Sobic.010G009400 G-protein alpha subunit, putative, expressed -
17 Sobic.009G138200 inactive receptor kinase At1g27190 precursor, putative, expressed -
18 Sobic.003G034300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed -
19 Sobic.005G119100 OsFBX70 - F-box domain containing protein, expressed -
20 Sobic.006G184500 RING-H2 finger protein, putative, expressed -


Gene co-expression network
sample Sobic001G351100 Sobic001G351100 Sobic005G072200 Sobic005G072200 Sobic001G351100--Sobic005G072200 Sobic003G422700 Sobic003G422700 Sobic001G351100--Sobic003G422700 Sobic006G042200 Sobic006G042200 Sobic001G351100--Sobic006G042200 Sobic004G251300 Sobic004G251300 Sobic001G351100--Sobic004G251300 Sobic004G340800 Sobic004G340800 Sobic001G351100--Sobic004G340800 Sobic002G137800 Sobic002G137800 Sobic001G351100--Sobic002G137800 Sobic002G073900 Sobic002G073900 Sobic001G351100--Sobic002G073900 Sobic003G403500 Sobic003G403500 Sobic001G351100--Sobic003G403500 Sobic007G054100 Sobic007G054100 Sobic001G351100--Sobic007G054100 Sobic003G359900 Sobic003G359900 Sobic005G072200--Sobic003G359900 Sobic006G052200 Sobic006G052200 Sobic005G072200--Sobic006G052200 Sobic005G072200--Sobic002G073900 Sobic010G080300 Sobic010G080300 Sobic005G072200--Sobic010G080300 Sobic009G190800 Sobic009G190800 Sobic005G072200--Sobic009G190800 Sobic005G072200--Sobic001G351100 Sobic003G402200 Sobic003G402200 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic003G422700--Sobic001G351100 Sobic009G028500 Sobic009G028500 Sobic003G422700--Sobic009G028500 Sobic003G422700--Sobic003G403500 Sobic003G422700--Sobic006G042200 Sobic004G281300 Sobic004G281300 Sobic003G422700--Sobic004G281300 Sobic003G424400 Sobic003G424400 Sobic003G422700--Sobic003G424400 Sobic001G034300 Sobic001G034300 Sobic003G422700--Sobic001G034300 Sobic009G195300 Sobic009G195300 Sobic003G422700--Sobic009G195300 Sobic008G125600 Sobic008G125600 Sobic003G422700--Sobic008G125600 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic006G042200--Sobic002G073900 Sobic002G040800 Sobic002G040800 Sobic006G042200--Sobic002G040800 Sobic006G065900 Sobic006G065900 Sobic004G251300--Sobic006G065900 Sobic004G251300--Sobic001G351100 Sobic004G251300--Sobic005G072200 Sobic003G397200 Sobic003G397200 Sobic004G251300--Sobic003G397200 Sobic003G002600 Sobic003G002600 Sobic004G251300--Sobic003G002600 Sobic001G102300 Sobic001G102300 Sobic004G251300--Sobic001G102300 Sobic001G212350 Sobic001G212350 Sobic004G251300--Sobic001G212350 Sobic009G195000 Sobic009G195000 Sobic004G251300--Sobic009G195000 Sobic004G251300--Sobic009G008100 Sobic004G340800--Sobic002G137800 Sobic004G340800--Sobic003G403500 Sobic004G340800--Sobic001G351100 Sobic004G340800--Sobic005G072200 Sobic004G092000 Sobic004G092000 Sobic004G340800--Sobic004G092000 Sobic004G340800--Sobic002G073900 Sobic010G199900 Sobic010G199900 Sobic004G340800--Sobic010G199900 Sobic001G414000 Sobic001G414000 Sobic004G340800--Sobic001G414000 Sobic005G045200 Sobic005G045200 Sobic004G340800--Sobic005G045200 Sobic001G095750 Sobic001G095750 Sobic002G137800--Sobic001G095750 Sobic001G118900 Sobic001G118900 Sobic002G137800--Sobic001G118900 Sobic002G137800--Sobic004G340800 Sobic002G137800--Sobic001G351100 Sobic006G205200 Sobic006G205200 Sobic002G137800--Sobic006G205200 Sobic001G161200 Sobic001G161200 Sobic002G137800--Sobic001G161200 Sobic003G109832 Sobic003G109832 Sobic002G137800--Sobic003G109832 Sobic003G138400 Sobic003G138400 Sobic002G137800--Sobic003G138400 Sobic002G137800--Sobic009G028500 Sobic003G308700 Sobic003G308700 Sobic002G073900--Sobic003G308700 Sobic002G073900--Sobic005G072200 Sobic002G073900--Sobic006G042200 Sobic002G073900--Sobic007G054100 Sobic001G261597 Sobic001G261597 Sobic002G073900--Sobic001G261597 Sobic002G073900--Sobic004G092000 Sobic002G073900--Sobic009G008100 Sobic004G227300 Sobic004G227300 Sobic002G073900--Sobic004G227300 Sobic010G009400 Sobic010G009400 Sobic002G073900--Sobic010G009400 Sobic002G001000 Sobic002G001000 Sobic003G403500--Sobic002G001000 Sobic001G500800 Sobic001G500800 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic004G131900 Sobic004G131900 Sobic003G403500--Sobic004G131900 Sobic002G200700 Sobic002G200700 Sobic003G403500--Sobic002G200700 Sobic003G403500--Sobic004G340800 Sobic007G054100--Sobic003G308700 Sobic007G054100--Sobic006G042200 Sobic002G273700 Sobic002G273700 Sobic007G054100--Sobic002G273700 Sobic007G054100--Sobic002G073900 Sobic003G153800 Sobic003G153800 Sobic007G054100--Sobic003G153800 Sobic002G174900 Sobic002G174900 Sobic007G054100--Sobic002G174900 Sobic002G187801 Sobic002G187801 Sobic007G054100--Sobic002G187801 Sobic004G096300 Sobic004G096300 Sobic007G054100--Sobic004G096300 Sobic005G090600 Sobic005G090600 Sobic007G054100--Sobic005G090600
Octagon: transcription factors


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