Gene annotation
Transcriptome id Sobic.006G184500.1
Synonym TL2, ATL2
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1B6PMR4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF177
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G16720 : TOXICOS EN LEVADURA 2
RAP-DB (Rice) LOC_Os04g48310.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a010157
Brachypodium -
Barley -
Wheat TraesCS2D02G397200 , TraesCS2A02G399700 , TraesCS2B02G417700
Populus -


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cDNA sequences
Sobic.006G184500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G372800 expressed protein -
2 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
3 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
4 Sobic.003G109700 expressed protein -
5 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -
6 Sobic.006G142775 - K11592: DICER1, endoribonuclease Dicer
7 Sobic.009G233300 60S ribosomal protein L18a-1, putative, expressed -
8 Sobic.001G387600 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
9 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
10 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
11 Sobic.006G119800 leucine rich repeat containing protein, expressed -
12 Sobic.001G222250 - -
13 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
14 Sobic.003G035100 no apical meristem protein, putative, expressed -
15 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
16 Sobic.002G260900 protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
17 Sobic.008G189400 NBS-LRR disease resistance protein, putative, expressed -
18 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.010G056000 GAGA-binding protein, putative, expressed -
20 Sobic.010G076300 - -


Gene co-expression network
sample Sobic006G184500 Sobic006G184500 Sobic003G372800 Sobic003G372800 Sobic006G184500--Sobic003G372800 Sobic002G134600 Sobic002G134600 Sobic006G184500--Sobic002G134600 Sobic001G191600 Sobic001G191600 Sobic006G184500--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic006G184500--Sobic003G109700 Sobic007G186900 Sobic007G186900 Sobic006G184500--Sobic007G186900 Sobic006G142775 Sobic006G142775 Sobic006G184500--Sobic006G142775 Sobic009G233300 Sobic009G233300 Sobic006G184500--Sobic009G233300 Sobic001G387600 Sobic001G387600 Sobic006G184500--Sobic001G387600 Sobic001G226700 Sobic001G226700 Sobic006G184500--Sobic001G226700 Sobic003G372800--Sobic006G184500 Sobic003G372800--Sobic003G109700 Sobic003G372800--Sobic002G134600 Sobic003G031800 Sobic003G031800 Sobic003G372800--Sobic003G031800 Sobic001G362200 Sobic001G362200 Sobic003G372800--Sobic001G362200 Sobic001G312900 Sobic001G312900 Sobic003G372800--Sobic001G312900 Sobic003G035100 Sobic003G035100 Sobic003G372800--Sobic003G035100 Sobic002G350600 Sobic002G350600 Sobic003G372800--Sobic002G350600 Sobic002G110300 Sobic002G110300 Sobic003G372800--Sobic002G110300 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic007G006900 Sobic007G006900 Sobic002G134600--Sobic007G006900 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic006G086500 Sobic006G086500 Sobic001G191600--Sobic006G086500 Sobic003G029700 Sobic003G029700 Sobic001G191600--Sobic003G029700 Sobic001G191600--Sobic006G142775 Sobic004G205800 Sobic004G205800 Sobic001G191600--Sobic004G205800 Sobic001G318432 Sobic001G318432 Sobic001G191600--Sobic001G318432 Sobic001G365900 Sobic001G365900 Sobic001G191600--Sobic001G365900 Sobic001G191600--Sobic002G294800 Sobic001G191600--Sobic010G076300 Sobic002G173000 Sobic002G173000 Sobic001G191600--Sobic002G173000 Sobic003G109700--Sobic001G362200 Sobic010G056000 Sobic010G056000 Sobic003G109700--Sobic010G056000 Sobic006G032900 Sobic006G032900 Sobic003G109700--Sobic006G032900 Sobic008G125501 Sobic008G125501 Sobic003G109700--Sobic008G125501 Sobic003G109700--Sobic003G372800 Sobic010G028800 Sobic010G028800 Sobic003G109700--Sobic010G028800 Sobic001G222250 Sobic001G222250 Sobic003G109700--Sobic001G222250 Sobic001G267900 Sobic001G267900 Sobic003G109700--Sobic001G267900 Sobic009G103600 Sobic009G103600 Sobic003G109700--Sobic009G103600 Sobic007G186900--Sobic010G028800 Sobic007G186900--Sobic006G142775 Sobic007G186900--Sobic010G056000 Sobic003G278500 Sobic003G278500 Sobic007G186900--Sobic003G278500 Sobic010G101800 Sobic010G101800 Sobic007G186900--Sobic010G101800 Sobic007G186900--Sobic001G191600 Sobic001G451400 Sobic001G451400 Sobic007G186900--Sobic001G451400 Sobic007G186900--Sobic003G029700 Sobic001G205200 Sobic001G205200 Sobic007G186900--Sobic001G205200 Sobic003G275700 Sobic003G275700 Sobic006G142775--Sobic003G275700 Sobic001G389100 Sobic001G389100 Sobic006G142775--Sobic001G389100 Sobic006G142775--Sobic001G191600 Sobic006G142775--Sobic007G186900 Sobic009G165700 Sobic009G165700 Sobic006G142775--Sobic009G165700 Sobic006G142775--Sobic003G029700 Sobic009G161550 Sobic009G161550 Sobic006G142775--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic006G142775--Sobic001G128300 Sobic003G221900 Sobic003G221900 Sobic006G142775--Sobic003G221900 Sobic006G273200 Sobic006G273200 Sobic009G233300--Sobic006G273200 Sobic008G165700 Sobic008G165700 Sobic009G233300--Sobic008G165700 Sobic002G187801 Sobic002G187801 Sobic009G233300--Sobic002G187801 Sobic006G119800 Sobic006G119800 Sobic009G233300--Sobic006G119800 Sobic009G233300--Sobic001G387600 Sobic001G372500 Sobic001G372500 Sobic009G233300--Sobic001G372500 Sobic001G284800 Sobic001G284800 Sobic009G233300--Sobic001G284800 Sobic003G309900 Sobic003G309900 Sobic009G233300--Sobic003G309900 Sobic003G176600 Sobic003G176600 Sobic009G233300--Sobic003G176600 Sobic001G387600--Sobic003G309900 Sobic001G387600--Sobic006G119800 Sobic003G413500 Sobic003G413500 Sobic001G387600--Sobic003G413500 Sobic001G387600--Sobic009G233300 Sobic001G387600--Sobic001G191600 Sobic008G146900 Sobic008G146900 Sobic001G387600--Sobic008G146900 Sobic001G387600--Sobic001G222250 Sobic001G253700 Sobic001G253700 Sobic001G387600--Sobic001G253700 Sobic010G009400 Sobic010G009400 Sobic001G387600--Sobic010G009400 Sobic001G226700--Sobic002G294800 Sobic001G226700--Sobic002G134600 Sobic010G265300 Sobic010G265300 Sobic001G226700--Sobic010G265300 Sobic001G226700--Sobic001G362200 Sobic008G046500 Sobic008G046500 Sobic001G226700--Sobic008G046500 Sobic007G165900 Sobic007G165900 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800
Octagon: transcription factors


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